| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,494,153 – 12,494,246 |
| Length | 93 |
| Max. P | 0.541875 |
| Location | 12,494,153 – 12,494,246 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.50 |
| Mean single sequence MFE | -31.35 |
| Consensus MFE | -19.62 |
| Energy contribution | -20.07 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12494153 93 + 27905053 AAGCUUUCC-------U----UUCAGAAUGAAUGGA-----GCUCCUUCCGCCAGGCACGCUUAUUAACUUAAGCGAAUGGCGGCCGGCUGUCUGUCGUAAAUCAGACC- .(((..(((-------.----(((.....))).)))-----)))((..((((((....((((((......))))))..))))))..))..(((((........))))).- ( -32.00) >DroPse_CAF1 17420 104 + 1 CGACUUUCGCAGAGGCUAUCCGGCGGAAUGAUUGUA-----UUUCUUUUUGCCCGGCACGCUUAUUAAGUGAAGCGAAUGGCGUCCGGCUGUCUCCCGUAAAUCAGACC- .(((..(((..((.((((((((((((((.((.....-----..)).))))).))))..(((((........))))).))))).)))))..)))................- ( -27.70) >DroSim_CAF1 14922 93 + 1 AAGCUUUCC-------U----UUCAGAAUGAAUGGA-----GCUCCUUCCGCCAGGCACGCUUAUUAACUUAAGCGAAUGGCGGCCGGCUGUCUGUCGUAAAUCAGACC- .(((..(((-------.----(((.....))).)))-----)))((..((((((....((((((......))))))..))))))..))..(((((........))))).- ( -32.00) >DroEre_CAF1 15926 93 + 1 AAGCUUUCC-------U----UUCAGAAUGAAUGGA-----GCUCCUUCCGCCGGGCACGCUUAUUAACUUAAGCGAAUGGCGGCCGGCUGUCUGUCGUAAAUCAGACC- .(((..(((-------.----(((.....))).)))-----)))((..((((((....((((((......))))))..))))))..))..(((((........))))).- ( -31.30) >DroYak_CAF1 15833 94 + 1 AAGCUUUCC-------U----UUCAGAAUGAAUGGA-----GCUCCUUCCGCCAGGCACGCUUAUUAACUUAAGCGAAUGGCGACCGGCUGUCUGUCGUAAAUCAGACCC .((((((((-------.----(((.....))).)))-----).......(((((....((((((......))))))..)))))...))))(((((........))))).. ( -29.60) >DroAna_CAF1 15073 96 + 1 GAGCUUUCU-------U----U--GGAAUAUAUGGACAGUAUCCCUUUCCGGCCGGCACGCUUAUUAACUUGAGCGCAUGGCGGCCGGCUGUCUGCCGUAAAUCAGGCC- .........-------.----.--.........((((((.........(((((((.((((((((......))))))..)).)))))))))))))(((........))).- ( -35.50) >consensus AAGCUUUCC_______U____UUCAGAAUGAAUGGA_____GCUCCUUCCGCCAGGCACGCUUAUUAACUUAAGCGAAUGGCGGCCGGCUGUCUGUCGUAAAUCAGACC_ ............................................((..((((((....((((((......))))))..))))))..))..(((((........))))).. (-19.62 = -20.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:17 2006