| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,491,569 – 12,491,687 |
| Length | 118 |
| Max. P | 0.980340 |
| Location | 12,491,569 – 12,491,687 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.36 |
| Mean single sequence MFE | -26.21 |
| Consensus MFE | -23.14 |
| Energy contribution | -23.09 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.980340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12491569 118 + 27905053 AUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCC-CCCCUCAACUAAACGACAAACUUAUGGUCCAA-A .....(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).)))))-..............(((.........)))...-. ( -26.54) >DroPse_CAF1 15053 115 + 1 AUUAAGGGCACAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUACUUUUAUUUGGCC-CC---A-ACUGAACGACAAACUUAUGGUCCGUCC .....((((..(((((((((((..(((...(((((((((..............)))))))))...))))))))))))))...)))-).---.-.......(((..((.....))..))). ( -28.74) >DroGri_CAF1 64023 114 + 1 AUUAAGAGCGCAUAAAAGUAAACAAGCUAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUU-UUAUUUUUAUUUGCCC-CC-AAAAACUAAACGACAAACUUAUGGUCCA--- .......(((.(((((((((((...(((..(((((((((..............)))))))))..))))-)))))))))).)))..-..-...........(((.........)))..--- ( -19.84) >DroEre_CAF1 13338 114 + 1 AUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCC--U---CAACUAAACGACAAACUUAUGGUCCCA-A ....((((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).)))))--)---.........(((.........)))...-. ( -27.54) >DroAna_CAF1 12597 114 + 1 AUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUCGCCUCCC---CAACUAAACGACAAACUUAUGGUCCA--- .....(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).)))))...---.........(((.........)))..--- ( -25.84) >DroPer_CAF1 15607 116 + 1 AUUAAGGGCACAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUACUUUUAUUUGGCC-CC---AAACUGAACGACAAACUUAUGGUCCGUCC .....((((..(((((((((((..(((...(((((((((..............)))))))))...))))))))))))))...)))-).---.........(((..((.....))..))). ( -28.74) >consensus AUUAAGGGCGCAUAAAAGUAAACAAGCGAAAAGUGUCGGAAUUUCACACAUAAUUGGCACUUGAAGUUUUUAUUUUUAUUUGCCC_CC___AAACUAAACGACAAACUUAUGGUCCA___ .....(((((.(((((((((((..(((...(((((((((..............)))))))))...)))))))))))))).)))))...............(((.........)))..... (-23.14 = -23.09 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:16 2006