| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,489,870 – 12,489,962 |
| Length | 92 |
| Max. P | 0.682259 |
| Location | 12,489,870 – 12,489,962 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.10 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -15.76 |
| Energy contribution | -17.23 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12489870 92 - 27905053 -UGAGCUUGGGGCACUGGGUCACUCAGCCAUCUUUUGGUUUGA----UUCGGUGUGCCAAUGAUGAUGGCAUUAUUAUACAACUAACACAUUGAAUA -.......((.(((((((((((...(((((.....))))))))----)))))))).))(((((((....)))))))..................... ( -27.70) >DroPse_CAF1 13316 90 - 1 -UGGGGUUGGGGCACUGGGUCAGUCGGCUCCCUGCCAGUG---UCUGUUCGGUGUGCCAAUG---AUGGCAUUAUUAUACAAUUCACAUUCAAAAUC -..(((((((((((((((..(((........)))))))))---))).......((((((...---.)))))).......))))))............ ( -27.40) >DroSec_CAF1 11372 91 - 1 -UU-GCUUGGGGCACUGGGUCACUCAGCCAUCUUUUGGUUUGA----UUCGGUGUGCCAAUGAUGAUGGCAUUAUUAUACAACUAACAUACUGAAUA -..-....((.(((((((((((...(((((.....))))))))----)))))))).))(((((((....)))))))..................... ( -27.70) >DroSim_CAF1 10709 92 - 1 -UGAGCUUGGGGCACUGGGUCACUCAGCCAUCUUUUGGUUUGA----UUCGGUGUGCCAAUGAUGAUGGCAUUAUUAUACAACUAACAUACUGAAUA -.......((.(((((((((((...(((((.....))))))))----)))))))).))(((((((....)))))))..................... ( -27.70) >DroEre_CAF1 11581 92 - 1 -CGAGCUUGGGGCACUGGGUCACUCAGCCAUUUUUUGGUUUGA----UUCGGUGUGCCAAUGAUGAUGGCAUUAUUAUACAACAGACAUACUGAGUA -...((((((.(((((((((((...(((((.....))))))))----)))))))).))(((((((....)))))))................)))). ( -29.90) >DroAna_CAF1 10962 83 - 1 GCGAUCUCGGGGCACUGGGUCAGUCAGGCA-------GGCAGA----GUUGGUGUGCCAAUG---AUGGCAUUAUUAUACAAUUCACAUACCGAAUA ((.(((..((.((((..(.((.(((.....-------))).))----.)..)))).))...)---)).))...........((((.......)))). ( -24.70) >consensus _UGAGCUUGGGGCACUGGGUCACUCAGCCAUCUUUUGGUUUGA____UUCGGUGUGCCAAUGAUGAUGGCAUUAUUAUACAACUAACAUACUGAAUA ......((((.((((((((....(((((((.....)))).)))....)))))))).))))..................................... (-15.76 = -17.23 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:12 2006