| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,489,144 – 12,489,241 |
| Length | 97 |
| Max. P | 0.834749 |
| Location | 12,489,144 – 12,489,241 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 74.51 |
| Mean single sequence MFE | -21.67 |
| Consensus MFE | -11.85 |
| Energy contribution | -11.55 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12489144 97 - 27905053 UG---AAGCAAAAAUUGAAAAAG--GUAAAAUAAAACCAAAAAGGUGCGUGAGGCAUAAGCCCUUGCUUUAAGCGGAUUUUAUCGGCGGUUCGCCAAAAAUU ..---.................(--(((((((...(((.....)))((.(((((((........))))))).))..))))))))((((...))))....... ( -23.20) >DroPse_CAF1 12559 84 - 1 UC---GAACACAAGUCGGGGA--------AAU-------AAACCGUGCGUGCGGCUUAUGCCCGUUCGUUAAGCCGAUUUUAUCGGCGAUCUGACAGAAAUU ..---........(((((((.--------.((-------((.((((....)))).))))..)).........((((((...))))))...)))))....... ( -24.80) >DroSec_CAF1 10630 94 - 1 -----AAGCAAAAAUUGAAAAAC---AAAAAUAAAACCAAAAAGGUGCGUGAGGCAUAAGGCCUUGCGUUAAGCGGAUUUUAUCGGCGAUUCGCCAAAAAUU -----..((..............---.........(((.....)))(((..((((.....))))..)))...))..........((((...))))....... ( -23.10) >DroSim_CAF1 9946 96 - 1 UG---AAGCAAAAAUUGAAAAAC---AAAAAUAAAACCGAAGAGGUGCGUGAGGCAUAAGCCCUUGCGUUAAGCGGAUUUUAUCGGCGAUUCGCCAAAAAUU ..---..................---....(((((((((.......(((..((((....).)))..)))....))).)))))).((((...))))....... ( -21.20) >DroEre_CAF1 10789 97 - 1 UG---AAACAGAAAUUGAAAA--AAUAAAACCAAAAGCAAAACGGUGCGUGAGGCUUAAGCCCUUGUGUUAAGCGGAUUUCAUCGGCGAUUCGCCAAAAAUU ..---.....((((((.....--......(((...........)))(((..((((....).)))..)))......))))))...((((...))))....... ( -18.10) >DroAna_CAF1 10244 100 - 1 AAAAUAAGAAAACAUGGAAAA--AAUAAUAAAGUAAGCAGACUUGUGCGUGAGGCUUAAGCCUGUUCGUUAAGCGGAUUUUAUCGAAGAUCUGCCAGAAAUU .....................--........((..(((((.((((.((.....)).)))).)))))..))..(((((((((....)))))))))........ ( -19.60) >consensus UG___AAGCAAAAAUUGAAAA_____AAAAAUAAAACCAAAAAGGUGCGUGAGGCAUAAGCCCUUGCGUUAAGCGGAUUUUAUCGGCGAUUCGCCAAAAAUU ..............................................(((..((((....).)))..)))...(((((((........)))))))........ (-11.85 = -11.55 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:11 2006