Locus 4755

Sequence ID 3R_DroMel_CAF1
Location 12,481,683 – 12,481,775
Length 92
Max. P 0.576336
window7802

overview

Window 2

Location 12,481,683 – 12,481,775
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 73.21
Mean single sequence MFE -14.80
Consensus MFE -5.26
Energy contribution -6.08
Covariance contribution 0.82
Combinations/Pair 1.31
Mean z-score -1.73
Structure conservation index 0.36
SVM decision value 0.09
SVM RNA-class probability 0.576336
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12481683 92 - 27905053
AAAAAUAAAAGAAAUUGAU-UUUUC-AAUUAAUUUCCUUAAAUUCUUUCAAAAGAAUUUAGCUAAACGCCCACUUUUAGCGCGGACUCAAACCA
..........(((((((((-(....-))))))))))..(((((((((....)))))))))((((((........))))))..((.......)). ( -17.30)
>DroSec_CAF1 3187 93 - 1
AAAAAUAUAAGAAAUUGAU-UUUCCUAGUUAGUUUCCUUAAAAUCUUUCAAAAGAAUUAGGCGAAACCCCUAUUUCUAACAUGGACUCAAGCCA
.......((((((((((((-(.....))))))))).))))............((((.((((.(....))))).))))....(((.(....)))) ( -14.50)
>DroSim_CAF1 2007 93 - 1
AAAAAUACAAGAAAUUGAU-UUUCCUAGUUAGUUUCCUUAAAAUCUUUCAAAAGAAUUAGGCGAAACCCCUAUUUCUAGCACGGACUCAAACCA
..........(((((((((-(.....))))))))))................((((.((((.(....))))).)))).....((.......)). ( -14.00)
>DroEre_CAF1 3317 94 - 1
AUAAAGUAAGGAAACUGACUUUUUCUAGUUAACCUCUUUAAAAUCUUGUAAAAGAUUUAUGCGAAACGCCUGGAGCUAGCACGGACUCGAACCA
..(((((.((....)).)))))..((((((..((......(((((((....)))))))..(((...)))..))))))))...((.......)). ( -17.80)
>DroYak_CAF1 3181 77 - 1
------------UAUUGUCGUUUUCUCGUUAAC-----UAAAAUCUUUUAAAAGGUUUUGGCGAAACACUUACUUCUAGCACAGACUCAAACCA
------------....((((......)((((.(-----(((((((((....)))))))))).(((........)))))))...)))........ ( -10.40)
>consensus
AAAAAUAAAAGAAAUUGAU_UUUUCUAGUUAAUUUCCUUAAAAUCUUUCAAAAGAAUUAGGCGAAACCCCUACUUCUAGCACGGACUCAAACCA
..........(((((((((........)))))))))....(((((((....))))))).................................... ( -5.26 =  -6.08 +   0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:06 2006