Locus 4754

Sequence ID 3R_DroMel_CAF1
Location 12,476,152 – 12,476,272
Length 120
Max. P 0.860563
window7801

overview

Window 1

Location 12,476,152 – 12,476,272
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.33
Mean single sequence MFE -41.32
Consensus MFE -22.10
Energy contribution -21.72
Covariance contribution -0.38
Combinations/Pair 1.42
Mean z-score -1.85
Structure conservation index 0.53
SVM decision value 0.83
SVM RNA-class probability 0.860563
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12476152 120 - 27905053
ACCGCUCUCGAAGCUUACGCACCCACGGUCACUGGUGGCCAUCUGGUGCACCAAUUCGACGCUGCAUCAGUUGGCCCUGGAGCAGCAGCUGCUGCCCAGUUGGAAUCUCCGGUUGCUCCA
...(((.....)))............(((.(((((.(((((.((((((((.(........).)))))))).)))))((((.(((((....))))))))).........))))).)))... ( -46.00)
>DroVir_CAF1 6687 120 - 1
GCCGCUUGGACAACUCACGCAUGAACGCACCUUAGUUGCCAUUUGGUGCACGAACUCAAACCUGCAUCAACAGGCGCUGGAAACACAGCUUCUGCCACGUUGGCAACUACGUUUGCUACA
((.((.(((.....))).))..(((((.....(((((((((.((((((((.(........).))))))))((((.((((......)))).))))......)))))))))))))))).... ( -37.60)
>DroPse_CAF1 6204 120 - 1
GCCGCUUUCCAAGCUGACCAAUACACGUACCCUUGUGGCCAUUUGGUGCACGAAUUCAAUCCAGCACCAGACGGCUUUGGAAACACAAAUUUUGCCUAGCUGGAAUCUACGCCUACUCCA
((....(((((.((((..(((..((((......))))(((.((((((((..((......))..)))))))).)))..((....))......)))..))))))))).....))........ ( -33.70)
>DroGri_CAF1 5949 120 - 1
GCCGCUCAGCGAGCUCACACACAGGCACACCUUGGUGGCCGUUUGGUGCACGAACUCCACGCUGCAUCAGCAGGCCCUGGAAAUGCAGCUGCUGCCUCGCUGGCGACUGCGAUUGCUGCA
((.((.((((.((((((....((((..(((....)))(((..((((((((((.......)).))))))))..)))))))....)).))))))))..((((.(....).))))..)).)). ( -45.80)
>DroSec_CAF1 25301 120 - 1
ACCGCUCUCCCAGCUCACGCACUCACGGUCACUGGUGGCCAUCUGGUGCACCAAUUCGACGCUGCAUCAGUUGGCCCUGGAGCAGCAGCUCUUGCCCAGAUGGAAUCUGCGCUUGCUCCA
.........((((....((......))....)))).(((((.((((((((.(........).)))))))).)))))..((((((((.((....)).(((((...))))).)).)))))). ( -43.80)
>DroYak_CAF1 24522 120 - 1
ACCGCUCUCAGAACUCACGCACCCACGAUCACUGGUGGCCAUCUGGUGCACCAACUCGACGCUGCAUCAGUUGGCUCUGGAGCAACAGCUAUUGCCCAGCUGGAAACUGCGAUUGCUUCA
...((((.((((.......((((..........))))((((.((((((((.(........).)))))))).))))))))))))...(((.(((((......(....).))))).)))... ( -41.00)
>consensus
ACCGCUCUCCAAGCUCACGCACACACGCACACUGGUGGCCAUCUGGUGCACCAACUCGACGCUGCAUCAGUUGGCCCUGGAAAAACAGCUGCUGCCCAGCUGGAAACUGCGAUUGCUCCA
...((..........................((((.((((..((((((((.(........).))))))))..)))))))).....(((((.......)))))............)).... (-22.10 = -21.72 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:05 2006