Locus 4752

Sequence ID 3R_DroMel_CAF1
Location 12,459,747 – 12,459,863
Length 116
Max. P 0.972114
window7799

overview

Window 9

Location 12,459,747 – 12,459,863
Length 116
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 81.53
Mean single sequence MFE -33.80
Consensus MFE -24.86
Energy contribution -26.87
Covariance contribution 2.01
Combinations/Pair 1.09
Mean z-score -2.56
Structure conservation index 0.74
SVM decision value 1.69
SVM RNA-class probability 0.972114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12459747 116 + 27905053
ACCCUCCUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCGAAACUGUGAGGCAAAGUGCGCCGAACAGUUUUGAGUCCGCACUGUAGAACGGCUAUAUCA--UUCGACCGCUCGAAU
.........((((.(.....(....)..((((((((.(((((((((((..(((.......)))..)))))))))))..)))))))).....).))))...(--(((((....)))))) ( -38.50)
>DroSim_CAF1 7914 118 + 1
UCCUUCCUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCGAAACUGUGAGGCAAUAUGCGUCGAACAGUUUUGAGUCCGCACUGUAAAACGGCUAUAUCAUAUUCGACCGCUCGAAU
.........((((.(.....(....)..((((((((.(((((((((((((.((.....)).))..)))))))))))..)))))))).....).)))).....((((((....)))))) ( -35.80)
>DroEre_CAF1 7864 109 + 1
UCCUCUUUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCG----UGUGCAGCAUU--UAAUCAUAUUGCUGUGAAA-CGGACUGUAAAACGGCUAUAUCA--UUCGACCGCUCGAAU
.........((((.(.....(....)..(((((.((((((.----...((((((..--.........))))))))))-)).))))).....).))))...(--(((((....)))))) ( -27.10)
>consensus
UCCUUCCUCAUAGGCAUAUACAUUAGAAACAGUGCGUUUCGAAACUGUGAGGCAAU_UGCGUCGAACAGUUUUGAGUCCGCACUGUAAAACGGCUAUAUCA__UUCGACCGCUCGAAU
.........((((.(.....(....)..((((((((.(((((((((((..(((.......)))..)))))))))))..)))))))).....).))))......(((((....))))). (-24.86 = -26.87 +   2.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:03 2006