Locus 4751

Sequence ID 3R_DroMel_CAF1
Location 12,457,519 – 12,457,630
Length 111
Max. P 0.836930
window7798

overview

Window 8

Location 12,457,519 – 12,457,630
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 73.17
Mean single sequence MFE -27.50
Consensus MFE -15.22
Energy contribution -16.08
Covariance contribution 0.86
Combinations/Pair 1.17
Mean z-score -1.70
Structure conservation index 0.55
SVM decision value 0.74
SVM RNA-class probability 0.836930
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12457519 111 + 27905053
UCUACCCUCUGAUUACUCUUUGCAGCCACUGAGGCGUACACCCAGAAACGACUGCCGAAUACCGUGUCAUCGGACAUGGCCGGCAAUCCACCGCUGUACAUCACAAAGAAC
................((((((..(((.....)))(((((.........((.(((((....(((((((....))))))).))))).))......)))))....)))))).. ( -31.46)
>DroVir_CAF1 5520 98 + 1
UCCCA-------------CGCUCAGCCACCGCGGCGUUCAGCAAAGAUCAACUGGAAAAGACCGUGUCAUCGGACAUGAACGGCAAUCCUCCGCUGUACAUCACAAAGAGC
.....-------------.((((.(((.....)))((.((((..((.....))(((......((((((....))))))...((....))))))))).))........)))) ( -25.80)
>DroGri_CAF1 6160 98 + 1
UCAAU-------------CGUUUAGCGACCGCUGCGUUCAGCAAAGACCAACUGGAAAAGGCCGUGUCAUCGGACAUGGAUGGCAAUCCGCCGCUGUACAUCACAAAGAAU
.....-------------.((.((((..((((((....)))).....((....))....))(((((((....)))))))..(((.....))))))).))............ ( -27.30)
>DroMoj_CAF1 5844 98 + 1
UCCCA-------------CGUUUAGCCACGGCGGCGUUCAGUAAAGAUCAACUGGAAAAGACCGUGUCAUCGGACAUGGAAGGGAAUCCGCCGCUCUACAUAACAAAGAGC
((((.-------------......(((.....))).((((((........)))))).....(((((((....)))))))..)))).......(((((.........))))) ( -29.90)
>DroAna_CAF1 5234 102 + 1
UCAACU--UCA-------AUUCCAGCAACUGCGGCGUACAGCCAACAGAAUCUGCCCAACACCAUUUCAUCGGACAUGGACGGCAAUCCGCCACUCUACAUCACAAAGAAC
.....(--((.-------......((....))((((....(((..(((...))).......((((.((....)).))))..)))....))))...............))). ( -19.10)
>DroSim_CAF1 5746 111 + 1
UCCACCCUCUGAUAACUCUUUGCAGCCACUGAGGCGUACACCCAGAAACGACUGCCGAAUACCGUGUCAUCGGACAUGGCCGGCAAUCCACCGCUGUACAUCACAAAGAAC
................((((((..(((.....)))(((((.........((.(((((....(((((((....))))))).))))).))......)))))....)))))).. ( -31.46)
>consensus
UCCAC_____________CGUUCAGCCACUGCGGCGUACAGCAAAGAACAACUGCAAAAGACCGUGUCAUCGGACAUGGACGGCAAUCCGCCGCUGUACAUCACAAAGAAC
........................(((.....)))((.((((...................(((((((....)))))))..((.......)))))).))............ (-15.22 = -16.08 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:02 2006