Locus 475

Sequence ID 3R_DroMel_CAF1
Location 1,768,077 – 1,768,187
Length 110
Max. P 0.918864
window768

overview

Window 8

Location 1,768,077 – 1,768,187
Length 110
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 81.34
Mean single sequence MFE -34.43
Consensus MFE -22.39
Energy contribution -24.08
Covariance contribution 1.69
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.65
SVM decision value 1.12
SVM RNA-class probability 0.918864
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1768077 110 - 27905053
AGUGCAUGAAAGAAAGUAGUCAGCCCCAUCAAAGGCUGG-GGUACAAGCAUGGCU-AAAAAUUCCGGCUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUAAGGCACUGA
(((((..........((((((.((((((........)))-)))...(((...)))-.........))))))...(((((((((.(((.....)))))))))))).))))).. ( -39.20)
>DroSec_CAF1 77334 112 - 1
AAUGCAUGAAUGGAAGUAGUCAGCCCCAUCAAAGGCUGGCGGUACAAGGUUGGAUGAAAAAUUCCACGUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUCAGGCACUGA
..(((.((((((......(((((((........)))))))(((((.....((((........)))).)))))))))(((((((.(((.....)))))))))))).))).... ( -37.10)
>DroSim_CAF1 79726 112 - 1
AAUGCAUGAAUGGAAGUAGUCAGCCCCAUCAAAGGCUGGCGGUACAAGGUUGGAUGAAAAAUUCCACCUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUCAGGCACUGA
..(((.(((((((..((((((((((........)))))))..))).((((.(((........)))))))..)))))(((((((.(((.....)))))))))))).))).... ( -39.30)
>DroYak_CAF1 76624 93 - 1
AAUAUAUGAAAAGAAGUAGUCAGCCAUAUCAAAGGCU-------------------AAAAAUUCCCGCAGUCCGUUGCUGAGAUGCCGUAAAGGUUUUCGGUGAGGCAUUGA
............(((......((((........))))-------------------.....)))...((((((.(..((((((.(((.....)))))))))..))).)))). ( -22.10)
>consensus
AAUGCAUGAAAGGAAGUAGUCAGCCCCAUCAAAGGCUGG_GGUACAAGGUUGGAU_AAAAAUUCCACCUACCCGUUGCCGAGAUGCCGAAAAGGUUUUCGGUCAGGCACUGA
(((((.............(((((((........)))))))..................................(((((((((.(((.....)))))))))))).))))).. (-22.39 = -24.08 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:05 2006