| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,455,863 – 12,455,965 |
| Length | 102 |
| Max. P | 0.614090 |
| Location | 12,455,863 – 12,455,965 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 88.24 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -20.99 |
| Energy contribution | -23.68 |
| Covariance contribution | 2.69 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12455863 102 + 27905053 UAAUUGCAUCUAAUUGUCAAAGGCUUCCAGCCAGAACCCAAGGGGGUUGAAUUUAGUAAGGAUGCUGACAGAUGGCCAUUGGAAAAUGGCGGCCAAGAGAAA .....((((((..........(((.....)))..(((((....)))))...........)))))).....(.(.((((((....)))))).).)........ ( -28.90) >DroAna_CAF1 3506 102 + 1 UAAUUGCAUCUAAUUGUCAAAGGCUUCUUGUUAGCGCCCAAGGGGGUUGAAUCGCCGGAGGAUGCUGACAGAUGGGCAAUGAAAAAUGGCUUCCAAGUGAAA ..(((((..(((.((((((....(((((.((((((.((....)).))))....)).)))))....)))))).))))))))......(((...)))....... ( -24.80) >DroSim_CAF1 4100 102 + 1 UAAUUGCAUCUAAUUGUCAAAGGCUUCCAGCCAGAACCCAAGGGGGUUGAAUUUGGUAAGGAUGCUGACAGAUGGCCAUUGGAAAAUGGCGGCCAAGAGAAA ......(((((....((((...((.(((.((((((((((....))))....))))))..))).)))))))))))((((((....))))))............ ( -32.50) >DroEre_CAF1 4032 102 + 1 UAAUUGCAUCUAAUUGUCAAAGGCUUCUAUCCAAAACCCAAGGGGGUUGAAUUUGGUAAGGAUGCUGACAGAUGGCCUUUGGAAAAUGGCGGACAGGAGAAA ........(((..(((((...(((((((..(((((((((....))))....)))))..)))).)))........(((.((....)).))).))))).))).. ( -26.10) >consensus UAAUUGCAUCUAAUUGUCAAAGGCUUCCAGCCAGAACCCAAGGGGGUUGAAUUUGGUAAGGAUGCUGACAGAUGGCCAUUGGAAAAUGGCGGCCAAGAGAAA ......(((((....((((...((.(((..(((((((((....))))....)))))...))).)))))))))))((((((....))))))............ (-20.99 = -23.68 + 2.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:55 2006