| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,447,816 – 12,447,931 |
| Length | 115 |
| Max. P | 0.513863 |
| Location | 12,447,816 – 12,447,931 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.03 |
| Mean single sequence MFE | -35.51 |
| Consensus MFE | -24.62 |
| Energy contribution | -25.68 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12447816 115 - 27905053 UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGAGAGUCUCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCUAAGGGGAAAAUUCGUGG ..(((((((...((((.(((....(((((((((.....))))))))).((((((..((...))..))))))))).))))...)))))))...((((.............)))).. ( -37.72) >DroSec_CAF1 12370 115 - 1 UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGAGUUUCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCAAAUGGGAAAAGUCGCGG ..(((((((...((((.(((....(((((((.(.....).))))))).((((((..((...))..))))))))).))))...)))))))...(((((...........))))).. ( -37.10) >DroSim_CAF1 11313 115 - 1 UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGAGUCGCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCAAAGGGGAAAAGUCGUGG ..(((((((...((((.(((....(.(((((.(.....).))))).).((((((..((...))..))))))))).))))...)))))))...(((((...........))))).. ( -33.20) >DroEre_CAF1 24713 115 - 1 UACUUCUGUACAGCUUCACCAGACGGGGCUUUCUUCCCGUGAGUCUCAGGGCUAGAUCAAAGAAAUAGCCAGGUAAAGUAUGAUAGAAGAAGGCGACUAGACGGAAAAGUCGCGG ..(((((((...((((.(((..((((((......)))))).........(((((..((...))..))))).))).))))...)))))))...((((((.........)))))).. ( -39.20) >DroYak_CAF1 22713 115 - 1 CGCUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGACUCUCAGGGCUAUAUCGUAGAAGUAGCCAGGUAGAGUGUGGUAAAAGAAGGCGGCUAGAGGGAAGAGUCGCCG .((........((((((.......))))))((((((((...((((((..((((((.((...)).))))))..).)))))((.((........)).))....))))))))..)).. ( -37.50) >DroAna_CAF1 23161 115 - 1 UUUUCUCGUAAAUCUUGCCCAGACGAGGCUUUCGUCCACUUAUCCGCAGUGCCAGAUCAAUAAAGUAUCCGGGUAAAGUGUGGAGAAGGAAAGCUGCUAUGGAAAAAAGCCAAGG .....((((.............))))((((((..(((((((.((((((.((((.((((......).)))..))))...)))))).)))...........))))..)))))).... ( -28.32) >consensus UACUUCUGUACAGCUUCACCAGACGAGGCUUUCUUCCCGUGAGUCUCAGGGCUAGAUCAUAGAAAUAGCCUGGUAAAGUGUGAUAGAAGAAGGCGGCUAAGGGGAAAAGUCGCGG ..(((((((...((((.(((....(((((((.........)))))))..(((((..((...))..))))).))).))))...)))))))...(((((...........))))).. (-24.62 = -25.68 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:52 2006