Locus 4741

Sequence ID 3R_DroMel_CAF1
Location 12,436,290 – 12,436,380
Length 90
Max. P 0.639016
window7784

overview

Window 4

Location 12,436,290 – 12,436,380
Length 90
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 88.45
Mean single sequence MFE -22.30
Consensus MFE -16.43
Energy contribution -16.77
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.74
SVM decision value 0.22
SVM RNA-class probability 0.639016
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12436290 90 - 27905053
AUGAGAAUCCGAAAGGCAUGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUAAUAAAAGCGAAC-----------A
........((....))..(.(((((.((((((....))).)))))))).)..(.((((.....((((((....))))))....)))).)-----------. ( -20.60)
>DroSec_CAF1 12041 101 - 1
AUGAGAAACCAAAAGGCAAGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUUAUAAAAGCGAAUGUUUCGCUUGUU
..............(((((((.(((((((((((.((((.(.......).))))))))................((((....)))))))))))..))))))) ( -22.90)
>DroSim_CAF1 12215 101 - 1
AUGAGAAACCAAAAGGCAAGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUUAUAAAAGCGAAUGUUUUGCUUGUU
..............(((((((.(((((((((((.((((.(.......).))))))))................((((....)))))))))))..))))))) ( -23.40)
>consensus
AUGAGAAACCAAAAGGCAAGCUAACAUUUCGAUACUUCGCAAAGUUAGGGAAGGUCGCAAAAAAUUAGCAAUAGCUUAUAAAAGCGAAUGUUU_GCUUGUU
........((....))...(((((..(((((((.((((.(.......).)))))))).)))...)))))....((((....))))................ (-16.43 = -16.77 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:49 2006