Locus 474

Sequence ID 3R_DroMel_CAF1
Location 1,767,106 – 1,767,220
Length 114
Max. P 0.884219
window767

overview

Window 7

Location 1,767,106 – 1,767,220
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.13
Mean single sequence MFE -28.00
Consensus MFE -21.84
Energy contribution -21.77
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.78
SVM decision value 0.93
SVM RNA-class probability 0.884219
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1767106 114 + 27905053
UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGC------AAAAGCAACAGCAAGAGCCACAUCAACUGAAACUGAAACUGAAUCAGAGUAAGAGUCCU
.....((((((((((((((((....(((((.((.......)).))))))))))))------........(((...((......))..)))............)))))))))......... ( -26.10)
>DroSec_CAF1 76384 108 + 1
UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGA------AACAGCAACGGCAAGAGCCACAUCAACUGAA------ACUGAAUCGGAGUAAGAGUCCU
.....((((((((((((((((....(((((.((.......)).)))))......)------))))))...(((....)))............------....)))))))))......... ( -29.20)
>DroSim_CAF1 78776 120 + 1
UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGCAAAAGCAACAGCAACGGCAAGAGCCACAUCAACUGAAACUGAAACUGAAUCAGAGUAAGAGUCCU
.....((((((((((((((((....(((((.((.......)).))))))))))))........(((....(((....)))...(((........)))..))))))))))))......... ( -31.20)
>DroYak_CAF1 75638 114 + 1
UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAAGCGAAACAGCAACAGCAACAUCAACUGAAAAUG------AAACUGCAACUGAAACAGAAUCAGAGUAAGAGUCCU
.....(((((((((.((((((.....((((.((((((..(((...((......))..)))..)).((....)).))))------.)))).......)))))))))))))))......... ( -25.50)
>consensus
UUUCCACUCUGAUUGCUGUUUAACAUGGUUACAUUGUCCUUGGAACCGAAACAGC______AACAGCAACGGCAAGAGCCACAUCAACUGAAACUGAAACUGAAUCAGAGUAAGAGUCCU
.....((((((((((((((((....(((((.((.......)).))))))))))))..........((....)).............................)))))))))......... (-21.84 = -21.77 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:04 2006