| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,428,312 – 12,428,407 |
| Length | 95 |
| Max. P | 0.887414 |
| Location | 12,428,312 – 12,428,407 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 87.14 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -22.33 |
| Energy contribution | -22.67 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12428312 95 - 27905053 CAUCGUCAUAACAGCUAUUCGACUAUUCAGCUAGUCGAUCGCCACAUGCUGCUAAGCAGAAACAUCACGGCGCGGCUGGAGAGUAUCUGUAUCUC ..........((((.(((((((....))..(((((((..((((...((((....))))((....))..))))))))))).))))).))))..... ( -27.40) >DroSec_CAF1 4148 79 - 1 CAUCGUCAUAACAGCUAUUCGACUAU-----UAGUCGAUCGCCACAUGCUGCUAAGCAGAAAAAUCACGGCUCGGCU-----------GUAUCUC ..........((((((..(((((...-----..)))))..(((...((((....))))((....))..)))..))))-----------))..... ( -22.70) >DroSim_CAF1 4227 90 - 1 CAUCGUCAUAACAGCUAUUCGACUAU-----UAGUCGAUCGCCACAUGCUGCUAAGCAGAAAAAUCACGGCGCGGCUGGAGAGUAUCUGUAUCUC ...........(((((..(((((...-----..))))).((((...((((....))))((....))..)))).)))))((((.........)))) ( -24.80) >consensus CAUCGUCAUAACAGCUAUUCGACUAU_____UAGUCGAUCGCCACAUGCUGCUAAGCAGAAAAAUCACGGCGCGGCUGGAGAGUAUCUGUAUCUC ...........(((((..(((((((......)))))))..(((...((((....))))((....))..)))..)))))................. (-22.33 = -22.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:45 2006