| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,419,354 – 12,419,509 |
| Length | 155 |
| Max. P | 0.989352 |
| Location | 12,419,354 – 12,419,473 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 95.80 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -28.39 |
| Energy contribution | -28.17 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.38 |
| Structure conservation index | 0.95 |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.989352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12419354 119 - 27905053 AAUGGGCGAUUAAUUGGAAGUUAUUCUAAUUAAUUGUUAUUCAGAGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACAACUCGGUCAAUAUCAUAAUUUAUUUAUUCGAUAAUUUUA ....(((((((((((((((....))))))))))))))).......(((((((((((........))))))))))).......((((..((((........))))...))))........ ( -30.90) >DroSec_CAF1 18301 119 - 1 AAUUGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUUUUCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAAGAACUCGGUCAAUAUCAUAAUUUAUUUAUUCGAUAAUUGUA .((((((((((((((((........))))))))))((((((....(((((((((((........))))))))))).))))))...))))))...((((((.(((.....))))))))). ( -28.70) >DroSim_CAF1 18033 119 - 1 AAUAGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUAUUCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACAACUCGGUCAAUAUCAUAAUUUAUUUAUUCGAUAAUUGUA ....(((((((((((((........))))))))))))).......(((((((((((........)))))))))))..((((.((((..((((........))))...))))...)))). ( -29.70) >consensus AAUAGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUAUUCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACAACUCGGUCAAUAUCAUAAUUUAUUUAUUCGAUAAUUGUA ....(((((((((((((........))))))))))))).......(((((((((((........))))))))))).......((((..((((........))))...))))........ (-28.39 = -28.17 + -0.22)
| Location | 12,419,393 – 12,419,509 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 94.54 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -31.99 |
| Energy contribution | -32.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -4.92 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12419393 116 - 27905053 AAAAACGUUGAACAAACACGAUAUGUGAUUAAUAAAAAUGGGCGAUUAAUUGGAAGUUAUUCUAAUUAAUUGUUAUUCAGAGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACA .......(((((....(((.....))).............(((((((((((((((....))))))))))))))).))))).(((((((((((........)))))))))))..... ( -32.20) >DroSec_CAF1 18340 116 - 1 AAAAACGUUGAACGAACACGAUAGGUGAUUAAUAAAAAUUGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUUUUCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAAGA ......((((((....(((.....))).............(((((((((((((........))))))))))))).))))))(((((((((((........)))))))))))..... ( -33.30) >DroSim_CAF1 18072 116 - 1 AAAAACGUUGAACGAACACGAUAGGUGAUUAAUAUAAAUAGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUAUUCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACA ......((((((....(((.....))).............(((((((((((((........))))))))))))).))))))(((((((((((........)))))))))))..... ( -34.10) >consensus AAAAACGUUGAACGAACACGAUAGGUGAUUAAUAAAAAUAGACGAUUAAUUGGAAGUUAUGCUAAUUAAUUGUUAUUCAGCGUCUGAAGUGGCUAAACUAUCACUUUAGACAAACA ......((((((....(((.....))).............(((((((((((((........))))))))))))).))))))(((((((((((........)))))))))))..... (-31.99 = -32.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:38 2006