Locus 473

Sequence ID 3R_DroMel_CAF1
Location 1,763,898 – 1,763,994
Length 96
Max. P 0.520582
window766

overview

Window 6

Location 1,763,898 – 1,763,994
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 85.16
Mean single sequence MFE -16.76
Consensus MFE -12.12
Energy contribution -12.00
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.57
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.520582
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1763898 96 + 27905053
GCAACAAGGACAACACAUGGCUCACACAGCUCAUACAGCACACAACUCACAGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA
(((.....(((((((.((((((.....))).))).....(((....(((.(((.....))))))....))).)))))))(((.......)))))). ( -17.80)
>DroSec_CAF1 73271 73 + 1
GCAACAAGGACAACACACGGCUCACAC-----------------------AGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA
(((.....(((((((.(((.....((.-----------------------(((.....))))).....))).)))))))(((.......)))))). ( -15.90)
>DroSim_CAF1 75636 82 + 1
GCAACAAGGACAACACACGGCUCACACAGCUCA--------------CACAGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA
(((.....(((((((.((((((.....))))..--------------((.(((.....)))))......)).)))))))(((.......)))))). ( -17.30)
>DroEre_CAF1 71349 73 + 1
GCGACAAGGACAACACACGGCUCACAC-----------------------AGCUCACAGCUUGAAAAAUGUUGGUUGUCAACAUUUUCAGUUUGCA
((((....((((((....((((.....-----------------------))))..((((((....)).)))))))))).((.......)))))). ( -15.20)
>DroYak_CAF1 72362 73 + 1
GCAACAAGGACAACACACGGCUCACAG-----------------------AGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA
(((.....(((((((.(((.......(-----------------------(((.....))))......))).)))))))(((.......)))))). ( -17.62)
>consensus
GCAACAAGGACAACACACGGCUCACAC_______________________AGCUCACAGCUUGAAAAAUGUUUGUUGUCAACAUUUUCAGUUUGCA
(((.....(((((((.(((..(((..........................(((.....))))))....))).)))))))(((.......)))))). (-12.12 = -12.00 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006