Locus 4728

Sequence ID 3R_DroMel_CAF1
Location 12,412,805 – 12,412,901
Length 96
Max. P 0.667009
window7765

overview

Window 5

Location 12,412,805 – 12,412,901
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 99.31
Mean single sequence MFE -30.00
Consensus MFE -30.00
Energy contribution -30.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 1.00
SVM decision value 0.28
SVM RNA-class probability 0.667009
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12412805 96 + 27905053
AAAGGGGGCGUGUCGUGGCCGGGUACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC
...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... ( -30.00)
>DroSec_CAF1 11751 96 + 1
AAAGGGGGCGUGUCGUGGCCGGGCACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC
...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... ( -30.00)
>DroSim_CAF1 11419 96 + 1
AAAGGGGGCGUGUCGUGGCCGGGCACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC
...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... ( -30.00)
>consensus
AAAGGGGGCGUGUCGUGGCCGGGCACCCGGUGCUUGUCUGUGUAAUUUACUAUUAUUUUUUAAGCACUUUGCUUUUAUGCUCGCCGCUGCUGCUAC
...(((((((((....((((((....)))(((((((.....(((((.....)))))....)))))))...)))..))))))).))((....))... (-30.00 = -30.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:31 2006