Locus 4727

Sequence ID 3R_DroMel_CAF1
Location 12,410,743 – 12,410,837
Length 94
Max. P 0.982643
window7764

overview

Window 4

Location 12,410,743 – 12,410,837
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 93.64
Mean single sequence MFE -28.38
Consensus MFE -24.81
Energy contribution -24.95
Covariance contribution 0.14
Combinations/Pair 1.07
Mean z-score -2.32
Structure conservation index 0.87
SVM decision value 1.92
SVM RNA-class probability 0.982643
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12410743 94 + 27905053
-AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU
-.((((.(((((((((((((..((((....)))).))))))))))).((((............))))...)).))))((((.......))))... ( -28.30)
>DroSec_CAF1 9696 94 + 1
-AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU
-.((((.(((((((((((((..((((....)))).))))))))))).((((............))))...)).))))((((.......))))... ( -28.30)
>DroSim_CAF1 9368 94 + 1
-AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGACUCCCCGUGCCUUUU
-(((.....(((((((((((..((((....)))).)))))))))))..))).............((((....((((....))))..))))..... ( -24.00)
>DroEre_CAF1 10165 94 + 1
-AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUGCCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU
-.((((.(((((((((((((..((((....)))).))))))))))).((((............))))...)).))))((((.......))))... ( -29.20)
>DroYak_CAF1 10048 94 + 1
-AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAGGCGCCUCAGGAGCAGGCUCCCUGUGCCUUUU
-(((.....(((((((((((..((((....)))).)))))))))))..)))...........((((((....((((....))))..))))))... ( -29.60)
>DroAna_CAF1 9986 94 + 1
GAGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUUGGCUGAAAUGUCGCUGCCAAUUUAUCAGGCGCCUCAAGACCAGGCAGGGACUG-CUCUC
((((......((((((((((..((((....)))).))))))))))(((.(((((........((....))........))))).))).)-))).. ( -30.89)
>consensus
_AGCUCAUGUAUUUCAGCUGUUAAUUGUCAAGUUUCGGCUGAAAUGUCGCUACCAAUUUAUCAAGCGCCUCAGGAGCAGGCUCCCCGUGCCUUUU
..((((...(((((((((((..((((....)))).))))))))))).((((............))))......))))((((.......))))... (-24.81 = -24.95 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:30 2006