| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,401,827 – 12,401,919 |
| Length | 92 |
| Max. P | 0.660325 |
| Location | 12,401,827 – 12,401,919 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.15 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12401827 92 - 27905053 ----CAACUGGAGGUAGUGG------AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGGCCAGGGAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----........(((((.((------(((((((...(((....)))..(((...((((((((...))))))))...))).)))))))))-)))))........ ( -29.70) >DroPse_CAF1 6426 102 - 1 GGGCCCAAU-GAGGUAGCGGCAGCAUAACUUCAAAUGCAACAAAGCCACAAAAGUUUUGGCCAGUGGCCAAAGGACUUGACGGAGUUUUGCUGCCCAAAUAUG ..(((....-..))).(.(((((((.((((((....((......)).....(((((((((((...))))))..)))))...)))))).))))))))....... ( -34.50) >DroSim_CAF1 629 92 - 1 ----CAACUGGAGGUAGUGG------AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGUCCAGGGAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----.....((.(((...((------(((((.....(((....))).....))))))).))).))...(((..(((((....)))))..-))).......... ( -24.80) >DroEre_CAF1 1123 92 - 1 ----CGACCGAAGGUAGUGG------AACUUGGACUGCCAUGAAGCCACAAAAGUUCUGGCCAACGGCCAGGGAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----........(((((.((------(((((((....))).....((((((...((((((((...))))))))...))).)))))))))-)))))........ ( -28.60) >DroYak_CAF1 1049 92 - 1 ----CGACUGGAGGUAGUGG------AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGGCCAGGCAACUUGAUGGAGUUUU-CUGCCAAAAUAUG ----........(((((.((------(((((((...(((....))).....(((((((((((...)))))))..))))..)))))))))-)))))........ ( -28.80) >DroPer_CAF1 8996 102 - 1 GGGCCGAAU-GAGGUAGCGGCAGCAUAACUUCAAAUGCAACAAAGCCACAAAAGUUUUGGCCAGUGGCCAAAGGACUUGACGGAGUUUUGCUGCCCAAAUAUG ..(((....-..))).(.(((((((.((((((....((......)).....(((((((((((...))))))..)))))...)))))).))))))))....... ( -35.70) >consensus ____CGACUGGAGGUAGUGG______AACUUCGACUGCUAUGAAGCCACAAAAGUUCUGGCCACCGGCCAGGGAACUUGAUGGAGUUUU_CUGCCAAAAUAUG ............(((((.........((((((....((......))..(((...((((((((...))))))))...)))..))))))...)))))........ (-20.32 = -20.15 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:24 2006