Locus 4722

Sequence ID 3R_DroMel_CAF1
Location 12,392,627 – 12,392,738
Length 111
Max. P 0.610455
window7756

overview

Window 6

Location 12,392,627 – 12,392,738
Length 111
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 90.54
Mean single sequence MFE -33.03
Consensus MFE -26.53
Energy contribution -26.21
Covariance contribution -0.31
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.80
SVM decision value 0.16
SVM RNA-class probability 0.610455
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12392627 111 - 27905053
-UGGUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGCGGCUUUCCUGCUCCUGUAGCAAUUGCUUCGCAUAGAACG------GCGGCGAAUGAAAUGCAAUUAAAAU
-..........((((((....))))))........((((((((...((.((((((.(((......(((....)))..)))..))).)------)).))....))))))))........ ( -28.20)
>DroEre_CAF1 61480 111 - 1
-UGCUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGGGGCUUUCCUGCUCCUGCUGCAAUUGCUUCGCACAGAACG------GCGGCGAAUGAAAUGCAAUUAAAAU
-..........((((((....))))))........(((((((.((((((((......))))))(((((....(.(((.....)))).------)))))...)))))))))........ ( -33.50)
>DroYak_CAF1 58770 111 - 1
-UGCUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGAGGCUUUCCUGCUCCUGCUGCAAUUGCUUCGCACAGAACG------GCGGCGAAUGAAAUGCAAUUAAAAU
-..........((((((....))))))........(((((((.((((..((......))..))(((((....(.(((.....)))).------)))))...)))))))))........ ( -28.20)
>DroAna_CAF1 43303 118 - 1
UGGCAACUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUCGAAGCGGCUUUUCUGCUCCUGCUGCAAUUGCUUCGCACAGAGAGCAACGAGCGGCGAAUGAAAUGCAAUUAAAAU
.(....)....((((((....))))))........(((((((((..((.((((...((((((((.(((.........)))))).)))))..)))).))...)))))))))........ ( -42.20)
>consensus
_UGCUGUUUUCACGUACCACGGUGCGUAUGAUUUAUGCAUUUUCAAGCGGCUUUCCUGCUCCUGCUGCAAUUGCUUCGCACAGAACG______GCGGCGAAUGAAAUGCAAUUAAAAU
...........((((((....))))))........((((((((..((.(((......))).))(((((......(((.....)))........)))))....))))))))........ (-26.53 = -26.21 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:23 2006