| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,387,866 – 12,387,969 |
| Length | 103 |
| Max. P | 0.590226 |
| Location | 12,387,866 – 12,387,969 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.52 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -20.07 |
| Energy contribution | -20.41 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.590226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12387866 103 - 27905053 CAGACAAAUGGCCGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUUGCGG----AUGUCGCUG---AAUGCGAACCAGAUAGA--------ACGGCGAAU ..........((((...(((((((((((..((..(((....)))..))...))))))....)))))((----...((((..---...)))).)).......--------.)))).... ( -26.40) >DroPse_CAF1 53499 101 - 1 CAGACAAAUGGCCGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUGGCGGCUGUAUGUCGCCG---AGUGCGAAAGAG--------AUAAAGCA------ ..((((.((((((((.......((((((..((..(((....)))..))...)))))).......)))))))).))))((..---....(....)..--------.....)).------ ( -32.16) >DroEre_CAF1 56837 94 - 1 CAGACAAAUGGCCGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUUGCGG----AUGUCGCUG---AAUGCGAACCAGAUAGA----------------- ........((((((((......((((((..((..(((....)))..))...))))))......)))))----...((((..---...)))).)))......----------------- ( -25.00) >DroYak_CAF1 53815 110 - 1 CAGACAAAUGGCCGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUUGCGG----AUGUCGCUG---AAUGCGAACCAGAUAGAUGGGCAA-AUGGCGAAU ..((((.....(((((......((((((..((..(((....)))..))...))))))......)))))----.))))((((---..(((...(((......)))))).-.)))).... ( -29.10) >DroAna_CAF1 38235 96 - 1 CAGACAAAUGGACGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUGGCGG----AUGUCACUGGUGGGUGCGAAAAAGAGAA------------------ ............(((((.....((((((..((..(((....)))..))...))))))(((..((((..----..))))..)))..)))))..........------------------ ( -25.70) >DroPer_CAF1 50637 109 - 1 CAGACAAAUGGCCGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUGGCGGCUGUAUGUCGCCG---AGUGCGAAAGAGAUAAAGAGAUAAAGCA------ ............(((((.....((((((..((..(((....)))..))...))))))....((((((((.....)))))))---))))))......................------ ( -31.60) >consensus CAGACAAAUGGCCGCACGUAAACGCGUUAAAUUGAAAAUCAUUUUGAUCUCGACGCGACCUUUGGCGG____AUGUCGCUG___AAUGCGAAACAGAUAGA_________C_______ ..((((.....((((.......((((((..((..(((....)))..))...)))))).......)))).....))))((........))............................. (-20.07 = -20.41 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:18 2006