Locus 4715

Sequence ID 3R_DroMel_CAF1
Location 12,377,637 – 12,377,730
Length 93
Max. P 0.964134
window7746

overview

Window 6

Location 12,377,637 – 12,377,730
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 76.53
Mean single sequence MFE -36.80
Consensus MFE -25.23
Energy contribution -24.84
Covariance contribution -0.39
Combinations/Pair 1.15
Mean z-score -1.96
Structure conservation index 0.69
SVM decision value 1.56
SVM RNA-class probability 0.964134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12377637 93 + 27905053
AGCCAGGAGUCGCAGGACCGCCCGGCGUUGCCGGUGCACCUGGCACGAAGGUGAGUU--UUUGCCGGUGAUUCACCGAAAAUAACGUACAUGAGA
.((((((.(((....))).(((((((...))))).)).))))))......(((.(((--.((..(((((...)))))..)).))).)))...... ( -36.10)
>DroPse_CAF1 43077 71 + 1
AGCCGGGCCCCGCCGGACCGCCUGGCGUGUCCGGUGCACCUGGCACGAAGGUGAGU---------AGUGAUUCACCGAAA---------------
.((((((...(((((((((((...))).))))))))..)))))).....(((((((---------....)))))))....--------------- ( -39.10)
>DroEre_CAF1 46663 93 + 1
AGCCAGGAGUCGCAGGACCGCCCGGCGUGGCCGGUGCACCUGGCACGAAGGUGAGUU--UUUGCCGGUGAUUCACCGAAAAUGACGCAGAGGAGA
.((((((.(((....))).(((((((...))))).)).))))))((....))...((--((((((((((...)))))........)))))))... ( -36.10)
>DroYak_CAF1 43293 93 + 1
AGCCAGGAGUCGCAGGACCGCCCGGCGUGGCCGGUGCACCUGGCACGAAGGUGAGUU--UCUGCCGGUGAUUCACCGAAAAUGACGUACACGAGA
.((((((.(((....))).(((((((...))))).)).)))))).....((((((((--.(.....).))))))))........((....))... ( -36.90)
>DroAna_CAF1 27703 83 + 1
AGCCGGGACCAGCCGGACCGCCCGGAGUGGCGGGCGCACCUGGCACGAAGGUGAGUGAGUCUG-CGGUGAUUCAGCGAAAAUCC-----------
.(((((((((((((((..((((((......))))))...)))))((....))...)).)))).-))))................----------- ( -32.40)
>DroPer_CAF1 40180 71 + 1
AGCCGGGGCCCGCCGGACCGCCUGGCGUGUCCGGUGCACCUGGCACGAAGGUGAGU---------AGUGAUUCACCGAAA---------------
.((((((...(((((((((((...))).))))))))..)))))).....(((((((---------....)))))))....--------------- ( -40.20)
>consensus
AGCCAGGACCCGCAGGACCGCCCGGCGUGGCCGGUGCACCUGGCACGAAGGUGAGUU__U_UG_CGGUGAUUCACCGAAAAU_A___________
.((((((..(.....)...((((((.....)))).)).)))))).....(((((((.............)))))))................... (-25.23 = -24.84 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:14 2006