| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,377,487 – 12,377,597 |
| Length | 110 |
| Max. P | 0.942481 |
| Location | 12,377,487 – 12,377,597 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.48 |
| Mean single sequence MFE | -51.02 |
| Consensus MFE | -28.00 |
| Energy contribution | -29.08 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12377487 110 + 27905053 CUAAUAAACAUGUU--UCCUCGUC--------CUCACAGGGAGAGCCCGGUGAGCCGGGCCCGCCAGGACCUCCGGGCGAAGCGGGACAGCCGGGUGCGCCGGGCGAGCGAGGACCACCA ..............--(((((((.--------(((.....))).((((((((.(((.(((.((((.((....)).))))..(.....).))).))).))))))))..)))))))...... ( -50.30) >DroVir_CAF1 1825 109 + 1 CUAAUAAACAUGUU--UUUCAAUA---------AUCUAGGGUGAACCUGGCGAGCCCGGCCCGCCUGGACCCCCAGGCGAACCUGGAAAUCCAGGCGUACCCGGCGAGCGUGGACCACCU ..............--........---------.....(((((..((..((..(((.((..((((((((...(((((....)))))...))))))))..)).)))..))..))..))))) ( -46.70) >DroGri_CAF1 28016 109 + 1 CUAAUAGACAUAUU--UUUCAAUA---------AUCUAGGGUGAGCCAGGUGAACCUGGACCGCCGGGACCCCCAGGCGAACCUGGCAAUCCGGGCGUGCCAGGCGAACGUGGACCACCC ....((((..((((--....))))---------.))))(((((..(((.((...(((((..((((.(((...(((((....)))))...))).))))..)))))...)).)))..))))) ( -49.60) >DroMoj_CAF1 31328 111 + 1 CUAAUAAACGUAUUUCUUUCAAUC---------GACUAGGGUGAGCCGGGCGAGCCUGGUCCGCCGGGACCGCCGGGAGAGCCGGGCGUUGCUGGCGUGCCGGGCGAGCGUGGACCACCA ........................---------......((((..(((.((..((((((..((((((.(.((((.((....)).)))).).))))))..))))))..)).)))..)))). ( -56.70) >DroAna_CAF1 27553 110 + 1 CUAAUAAACGUGUU--UCCGUACC--------CCAACAGGGAGAGCCCGGCGAGCCGGGUCCGCCGGGACCACCGGGAGAGGCGGGACAGCCAGGAGCGCCGGGAGAGCGGGGAGCACCC .........(((((--(((....(--------((....)))....(((((((..((.(((((....))))).........(((......))).))..)))))))......)))))))).. ( -51.20) >DroPer_CAF1 40022 118 + 1 CUAAUAAACAUCUC--UCUUUCUCUCUGUUUGCGGCCAGGGCGAGCCUGGGGAGCCGGGUCCGCCGGGACCAGCGGGCGAGGCGGGACAGCCGGGGGUGCCGGGCGAGCGAGGACCACCG ..........((((--.((((((((((((((((((((..((((..(((((....)))))..)))).)).)).)))))).))).))))..(((.((....)).)))))).))))....... ( -51.60) >consensus CUAAUAAACAUGUU__UCUCAAUC_________AACCAGGGUGAGCCCGGCGAGCCGGGUCCGCCGGGACCACCGGGCGAACCGGGACAGCCGGGCGUGCCGGGCGAGCGUGGACCACCA .......................................((.(..(((.((..(((.(((.((((.((....((.(......).))....)).)))).))).)))..)).)))..).)). (-28.00 = -29.08 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:13 2006