| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,376,723 – 12,376,830 |
| Length | 107 |
| Max. P | 0.522399 |
| Location | 12,376,723 – 12,376,830 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.90 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -21.06 |
| Energy contribution | -21.78 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12376723 107 - 27905053 -GAUUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGUAUGCUACGGGCUGCCAUCUCUGGGC-CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC- -(((.(((((.((.(((((((((((....)))))))))))...))...)))))..)))((.((((-((........))))))..))...(((((....)))))......- ( -36.10) >DroPse_CAF1 41966 105 - 1 AGGACAAGGCAAGGACAACAAGUUGCAAAUAAUUUGUUGCAUU---UGCGCUGCCAUCUCCUGGC-CAUCUGCAUUUGCCCUUUGAGCAAUGGCCAUGACCACGACGAC- .((...(((((((..((((((((((....))))))))))..))---))).)).))...((.((((-(((.(((.((........)))))))))))).))..........- ( -32.70) >DroEre_CAF1 45727 107 - 1 -GACUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGUGUGCUACGGGCUGCCAUCUCUUGGC-CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC- -((..(((((..(.(((((((((((....))))))))))).)......)))))...))((..(((-((........)))))...))...(((((....)))))......- ( -31.50) >DroYak_CAF1 42353 107 - 1 -GACUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGUAUGCUACGGGCUGCCAUCUCUGGGC-CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC- -((..(((((.((.(((((((((((....)))))))))))...))...)))))...))((.((((-((........))))))..))...(((((....)))))......- ( -35.00) >DroAna_CAF1 26690 101 - 1 -----CAGCCAUGAACAACAAGUUGCAAAUAAUUUGUUGCAUA---CUGGCUGCCAUCUCUUGGC-CAUCUGCAUUUGGCCUCUGAAAAAUGGUCUUGACCAUGUCCACU -----((((((((..((((((((((....))))))))))..))---.)))))).........(((-((........)))))...((...(((((....))))).)).... ( -30.80) >DroPer_CAF1 39061 106 - 1 AGGACAAGGCAAGGACAACAAGUUGCAAAUAAUUUGUUGCAUU---UGCGCUGCCAUCUCCUGGCCCAUCUGCAUUUGCCCUUUGAGCAAUGGCCAUGACCACGACGAC- .((...(((((((..((((((((((....))))))))))..))---))).)).))...((.(((((.((.(((.((........)))))))))))).))..........- ( -28.90) >consensus _GAAUCAGCCAAGGACAACAAGUUGCAAAUAAUUUGUUGCAUG___CGGGCUGCCAUCUCUUGGC_CAUCUGCAUUUGGCCCCUGAAAAAUGGUCUUGACCAUGCCAAC_ .......((((((..((((((((((....))))))))))..........((.((((.....))))......)).)))))).........(((((....)))))....... (-21.06 = -21.78 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:11 2006