Locus 4710

Sequence ID 3R_DroMel_CAF1
Location 12,373,398 – 12,373,490
Length 92
Max. P 0.685830
window7740

overview

Window 0

Location 12,373,398 – 12,373,490
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 93.91
Mean single sequence MFE -16.81
Consensus MFE -14.91
Energy contribution -14.94
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -1.33
Structure conservation index 0.89
SVM decision value 0.32
SVM RNA-class probability 0.685830
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12373398 92 - 27905053
AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAGCAAACAACGGCUAAACAAGUUGGCAAACACCCCAGUGA
.....((((((((...(((((....(((((((................)))).)))...))))).....))))))))....(((....))). ( -18.29)
>DroSec_CAF1 41744 91 - 1
AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACGACGACAACACGUACAACAAACAACGGCUAAACA-GUUGGCAAACACCCCAGAGA
....(((....(((....((((((((((((........)))....)))))).)))........(((((...-.))))).......)))))). ( -15.70)
>DroSim_CAF1 41086 92 - 1
AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA
....(((((((((...((((((((((((((........)))....))))))........))))).....))))))((........)).))). ( -16.90)
>DroEre_CAF1 42065 92 - 1
AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA
....(((((((((...((((((((((((((........)))....))))))........))))).....))))))((........)).))). ( -16.90)
>DroYak_CAF1 38537 92 - 1
AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA
....(((((((((...((((((((((((((........)))....))))))........))))).....))))))((........)).))). ( -16.90)
>DroAna_CAF1 23615 87 - 1
AAUACUCGACUUGGCAUCGUUUACGUGCGUACACCACCCCGACAACACGUACAACAAACAAUGGCUAAACAAGUUGACAAUCCCCUU-----
.....(((((((((((.((....)))))((((................)))).................))))))))..........----- ( -16.19)
>consensus
AAUACUCGACUUGGCAUCGUUUACGUGCGUACAACACCACGACAACACGUACAACAAACAACGGCUAAACAAGUUGGCAAACACCCCAGAGA
.....(((((((((((.((....)))))((((................)))).................))))))))............... (-14.91 = -14.94 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:08 2006