Locus 471

Sequence ID 3R_DroMel_CAF1
Location 1,760,638 – 1,760,737
Length 99
Max. P 0.901218
window763

overview

Window 3

Location 1,760,638 – 1,760,737
Length 99
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -20.28
Consensus MFE -11.99
Energy contribution -11.52
Covariance contribution -0.47
Combinations/Pair 1.14
Mean z-score -2.18
Structure conservation index 0.59
SVM decision value 1.02
SVM RNA-class probability 0.901218
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1760638 99 - 27905053
-AUUGC------AGACUGUCGC--ACAGCAGACACGCUAAAACUGUUCACU-UG-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU--UUUC
-..(((------..((((((..--......))).((((((..........)-))-)))....(((((((((.......)))))))))..)))..))).........--.... ( -20.40)
>DroVir_CAF1 82236 100 - 1
UUUUGGAAUGGUUUGCUGUCGUCUG----------GCUAAAACUGUUCGCUUUUGGUGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU--UUCC
....((((((((.(((....((.(.----------(((((((........))))))).).))(((((((((.......))))))))).......))).))))))))--.... ( -24.10)
>DroPse_CAF1 60084 85 - 1
--------------------------UGCAGACACGCUAAAACUGUUCACUUUU-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUUGCAUGCCAUUUUUUUUUC
--------------------------(((((((.(((.((((........))))-)))....(((((((((.......)))))))))...)))))))............... ( -18.20)
>DroWil_CAF1 64421 90 - 1
---------------CUGUCGC----AGCAGACACACUAAAACUGUUCUCUUUU-GUGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU--UUCC
---------------.....((----(((..((.(((.((((........))))-)))....(((((((((.......)))))))))...))..)).)))......--.... ( -15.80)
>DroAna_CAF1 64954 93 - 1
--------------ACUGUCGC--GUAGCAGACACGCUAAAACUGUUCACUUUG-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUUGCAUGCCAUUUU--UUUC
--------------......((--((.((((((.(((((((.........))))-)))....(((((((((.......)))))))))...))))))))))......--.... ( -25.00)
>DroPer_CAF1 66614 85 - 1
--------------------------UGCAGACACGCUAAAACUGUUCACUUUU-GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUUGCAUGCCAUUUUUUUUUC
--------------------------(((((((.(((.((((........))))-)))....(((((((((.......)))))))))...)))))))............... ( -18.20)
>consensus
_______________CUGUCGC____AGCAGACACGCUAAAACUGUUCACUUUU_GCGAAACGUAUAAAUUUUCUAUUGAUUUAUGCCAAGUUCGCAUGCCAUUUU__UUUC
.......................................................(((((..(((((((((.......)))))))))....)))))................ (-11.99 = -11.52 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:00 2006