Locus 4706

Sequence ID 3R_DroMel_CAF1
Location 12,363,112 – 12,363,207
Length 95
Max. P 0.589644
window7731

overview

Window 1

Location 12,363,112 – 12,363,207
Length 95
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 85.22
Mean single sequence MFE -18.99
Consensus MFE -15.56
Energy contribution -15.48
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.53
Structure conservation index 0.82
SVM decision value 0.11
SVM RNA-class probability 0.589644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12363112 95 + 27905053
AGCUGCUUCCUCACACACG---CGCGCACACACACAUACACGCAUUCGCUUUAAUUAAGCAAACAUAGAGAAUGUUCAGCGUUGCGGCUAAAAAAUUC
((((((...(((......(---((.(............).)))....((((.....)))).......)))((((.....))))))))))......... ( -19.50)
>DroSec_CAF1 31574 89 + 1
AGCUGCUUCCUCACACACG---CGCACGCACACACA------CAUUCGCUUUAAUUAAGCAAACAUUGAGAAUGCUCAGCGUUGCGGCUAAAAAAUUC
((((((...((((.....(---(....)).......------.....((((.....))))......))))(((((...)))))))))))......... ( -20.20)
>DroSim_CAF1 30867 88 + 1
AGCUGCUUCCUCACACACG---CGCGCACACACACA------CAUUCGCUUUAAUUAAGCAAACAUUGAGAAUGCUCAGCGUUGCGGCUAAA-AAUUC
((((((............(---(((...........------.....((((.....))))......((((....)))))))).))))))...-..... ( -18.82)
>DroEre_CAF1 31863 87 + 1
AGCUGUUUCCUCACACACG---CGCGCACACA--------CACAUUCGCUUUAAUUAAGCAAACAUUGAGCGUGCUCAGCGUUGCGGCUAAAAAAUUC
((((((..........(((---(..((((.(.--------((.....((((.....))))......)).).))))...)))).))))))......... ( -19.80)
>DroAna_CAF1 13881 92 + 1
AGCUGCCUUCUCACAUAUAGUACACACGCCCCCA------CGCAUUCACUUUAAUUAAGCAAACAUUGGGAAUGCUCAGCGUUGCGGCUAAAAAAUUC
((((((......((.....))....((((.....------.((((((.((.................))))))))...)))).))))))......... ( -16.63)
>consensus
AGCUGCUUCCUCACACACG___CGCGCACACACACA____C_CAUUCGCUUUAAUUAAGCAAACAUUGAGAAUGCUCAGCGUUGCGGCUAAAAAAUUC
((((((.........................................((((.....)))).(((.(((((....))))).)))))))))......... (-15.56 = -15.48 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:00 2006