Locus 4705

Sequence ID 3R_DroMel_CAF1
Location 12,360,923 – 12,361,038
Length 115
Max. P 0.500000
window7730

overview

Window 0

Location 12,360,923 – 12,361,038
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 86.20
Mean single sequence MFE -24.68
Consensus MFE -21.12
Energy contribution -21.16
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12360923 115 + 27905053
ACGAAGCAAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAAAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAAAUACGGAUACCAUACUACGGGACCGAUUGCGGGACCG
....(((((...(..((.....))..).)))))((((((((((..((..(((((((.....)))))))..)).........(((...((.......))..))).)))))))))). ( -34.00)
>DroSec_CAF1 29546 90 + 1
ACGAAGCAAUCAGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAGAUACAGAUACCA-------------------------
.....(.(((((((..((((....))))..))))))).).......(..(((((((.....)))))))..)(((............))).------------------------- ( -17.50)
>DroSim_CAF1 28855 90 + 1
ACGAAGCAAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAGAUACGGAUACCA-------------------------
....(((((...(..((.....))..).)))))(((((((((...((..(((((((.....)))))))..)).......)))))).))).------------------------- ( -23.40)
>DroEre_CAF1 29750 90 + 1
ACGAAGCAAUCUGUUUGGUAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGUUUAAAAUACGGAUACCA-------------------------
((.((((.....)))).))..............((((((((((((((..(((((((.....)))))))..)))))....)))))).))).------------------------- ( -27.10)
>DroYak_CAF1 26018 90 + 1
ACAAAGCUAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGGGGUUAAAAUACGGAUACCA-------------------------
....(((.((((.....)))).........)))(((((((((...((..(((((((.....)))))))..)).......)))))).))).------------------------- ( -21.40)
>consensus
ACGAAGCAAUCUGUUUGGGAUUCAUUUUUUGCUGGUUCCGUAAGAUUUGUUUGGCUGUCGAAGUCAAAUGAGGUUAAAAUACGGAUACCA_________________________
.(.((((.....)))).)..............((((((((((...((..(((((((.....)))))))..)).......)))))).))))......................... (-21.12 = -21.16 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:59 2006