Locus 4704

Sequence ID 3R_DroMel_CAF1
Location 12,359,860 – 12,359,954
Length 94
Max. P 0.987334
window7729

overview

Window 9

Location 12,359,860 – 12,359,954
Length 94
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 92.81
Mean single sequence MFE -22.03
Consensus MFE -21.63
Energy contribution -21.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.98
SVM decision value 2.08
SVM RNA-class probability 0.987334
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12359860 94 - 27905053
AUGGGCUUUACUUUCGGAUGCAGCCUCAGCAACCGACUCAUCUGACUUAUACAACUCAUCCCGGCCAUGCCGCCAUACC--------GCCACAAUAAAAUCC
.(((((.......((((.(((.......))).))))..........................(((......))).....--------))).))......... ( -18.30)
>DroSec_CAF1 28498 102 - 1
UUGGGCUUUACUUUCGGAUGCAGCCUCAGCAUCCGACUCAUCUGACUUAUACAACUCAUCCCGGCAAUGCCGCCAUACCGCCAUAUCGCCACAAUAAAAUCC
((((((.......((((((((.......))))))))..........................(((......))).............))).)))........ ( -23.90)
>DroSim_CAF1 27814 102 - 1
UUGGGCUUUACUUUCGGAUGCAGCCUCAGCAUCCGACUCAUCUGACUUAUACAACUCAUCCCGGCAAUGCCGCCAUACCGCCAUAUCGCCACAAUAAAAUCC
((((((.......((((((((.......))))))))..........................(((......))).............))).)))........ ( -23.90)
>consensus
UUGGGCUUUACUUUCGGAUGCAGCCUCAGCAUCCGACUCAUCUGACUUAUACAACUCAUCCCGGCAAUGCCGCCAUACCGCCAUAUCGCCACAAUAAAAUCC
.(((((.......((((((((.......))))))))..........................(((......))).............))).))......... (-21.63 = -21.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:58 2006