| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,352,619 – 12,352,718 |
| Length | 99 |
| Max. P | 0.623771 |
| Location | 12,352,619 – 12,352,718 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.54 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -1.34 |
| Energy contribution | -0.90 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.06 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12352619 99 - 27905053 AUCUUGCUCUAGAAACUGA-GACUC---------------GGGGGAUUAUAA--AAAGGUAUUAC--CAGGUAACAGAAAAAAAACAAAAUGCACCUUU-UUCGUGUAAUUGAAGAAAGU .((((..........(((.-.(((.---------------..((...(((..--....)))...)--).)))..)))........(((..(((((....-...))))).))))))).... ( -12.50) >DroSec_CAF1 21411 86 - 1 AUCUUGU----------------UC---------------GGGGGAUUAUAAAAAAAGGUAUUACCCCAGGUAACAG--A-AAAACAAAAUGCACCUUUCUUCGAGUAAUUGAAGAAAGU .(((.((----------------((---------------.((((..(((........)))...))))..).)))))--)-..............((((((((((....)))))))))). ( -21.90) >DroSim_CAF1 20520 86 - 1 AUCUUGC----------------UC---------------GGGGGAUUAUAA--AAAGGUAUUACCCCAGGUAACAGCAA-AAAACAAAAUGCACCUUUCUUUGAGUAAUUGAAGAAAGU ...((((----------------..---------------((((...(((..--....)))...))))..))))..(((.-.........)))..(((((((..(....)..))))))). ( -23.80) >DroEre_CAF1 21293 99 - 1 AUCUUGUUCUCGAAACUGAAGACCC---------------AGGGGAUUAA-A--AAAGGUAUCUC--CAGGUAACAGCAA-AAAACAAAGCGCACUUUCGUUCGCGCAGUUGGAGAAAGU ......(((((..(((((...(((.---------------.((((((...-.--......)))))--).)))........-........(((.((....)).))).))))).)))))... ( -24.00) >DroYak_CAF1 17481 115 - 1 AUAUUGCUCUCGAAACUGAGAACUCAGUAUUUCGAAACUGAGGGGAUUAAGA--AAAGGUAUCAC--CAGGUAACAGCAA-AAAACAAAGUGCACUUGGGUUCAUGUAAUUGGAGAAAGU .......((((.((((((((..((((((........))))))..........--..........(--(((((....(((.-.........))))))))).)))).))..)).)))).... ( -21.80) >consensus AUCUUGCUCU_GAAACUGA__ACUC_______________GGGGGAUUAUAA__AAAGGUAUUAC__CAGGUAACAGCAA_AAAACAAAAUGCACCUUUCUUCGAGUAAUUGAAGAAAGU .........................................................(.((((......)))).)....................((((.((((......)))).)))). ( -1.34 = -0.90 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:57 2006