| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,352,407 – 12,352,503 |
| Length | 96 |
| Max. P | 0.814498 |
| Location | 12,352,407 – 12,352,503 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 90.40 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -22.88 |
| Energy contribution | -22.52 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12352407 96 + 27905053 GUCUAAGCUGUGAGCAGACGACCGCCCUGCAUCUCCAGUCCGCGUCUGCAUUCUUUGCACUCGAAGAAAAAUCCAAGUGAAAU----CUCUUAGCUAUUU .....(((((.(((((((((..((..(((......)))..))))))))).(((((((....)))))))...............----.)).))))).... ( -26.30) >DroSec_CAF1 21194 100 + 1 GUCUAAGCUGUGAGCAGACGAUCGCCCUGCAUCUCCAGUCUGCGUCUGCAUUCUUUGCACUCGAAGAAAAAUCCCAGUGAAAUGUAGCUCUUUGCUAUUC ......((((.(((((((((..((..(((......)))..))))))))).(((((((....)))))))...)).)))).....(((((.....))))).. ( -28.00) >DroSim_CAF1 20303 100 + 1 GUCUAAGCUGUGAGCAGACGACCGCCCUGCAUCUCCAGUCUGCGUCUGCAUUCUUUGCACUUGAAGAAAAAUCCCAGUGAAAUGUAACUCUUAGCUAUUU .....(((((.(((((((((..((..(((......)))..))))))))).((((((......))))))....................)).))))).... ( -23.70) >DroEre_CAF1 21093 99 + 1 GUCUAAGCUGUGAGCAGACGACCGCCCUGCAUCUCCAGUCCACGUCUGCAUUCUUUGCACUCGAAGAA-AUUUCCAAUGAAAUGUGUUUCGUAGCUGUUU .....(((((((((((((((...(..(((......)))..).))))))).(((((((....)))))))-(((((....))))).....)))))))).... ( -25.90) >DroYak_CAF1 17287 100 + 1 GUCUAAGCUGUGAGCAGACGACCGCCCUGCAUCUCCAGUCCACGUCUGCAUUCUUUGCACUCGAAGAAAAAUUCCAAUGAAAUGUAUUUCGUAGUUAUUU .....(((((((((((((((...(..(((......)))..).))))))).(((((((....)))))))....................)))))))).... ( -22.90) >consensus GUCUAAGCUGUGAGCAGACGACCGCCCUGCAUCUCCAGUCCGCGUCUGCAUUCUUUGCACUCGAAGAAAAAUCCCAGUGAAAUGUAUCUCUUAGCUAUUU .....(((((.(((((((((...(..(((......)))..).))))))).(((((((....)))))))....................)).))))).... (-22.88 = -22.52 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:56 2006