Locus 470

Sequence ID 3R_DroMel_CAF1
Location 1,760,129 – 1,760,224
Length 95
Max. P 0.697158
window762

overview

Window 2

Location 1,760,129 – 1,760,224
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 75.00
Mean single sequence MFE -29.82
Consensus MFE -13.33
Energy contribution -14.00
Covariance contribution 0.67
Combinations/Pair 1.18
Mean z-score -1.97
Structure conservation index 0.45
SVM decision value 0.34
SVM RNA-class probability 0.697158
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1760129 95 - 27905053
CUUGCGUAACAGCAGUUACAGCGGCUACAGCUCCAGCGGCUGCUGC--AUCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU
..((((((((....))))).(((((....((....))....)))))--........))).....(((((.((((((....)))))).....))))). ( -30.20)
>DroVir_CAF1 81851 89 - 1
GUUGCAACACA--AGCA---G---CAGCAGCAGCAGUGGCCAUGGCCAUGGCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU
(((((......--.)))---)---).((.((.((.(((((....))))).)).)).))......(((((.((((((....)))))).....))))). ( -32.90)
>DroGri_CAF1 70594 92 - 1
GCUGCACCACA--GGCAACUG---UAACAGCAGUCGUGGCCAUGGCACUGGCAGUGGCAUGAAUUGCGAUGAUGGAGCUAUCCAUUUAUACUCACAU
((((....(((--(....)))---)..)))).((((..(.((((.(((.....))).))))..)..))))((((((....))))))........... ( -32.10)
>DroEre_CAF1 67805 89 - 1
GUUUCGUUACAGCAGUUACAGCAGUUAC------AGCGGCUGCAGC--AGCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU
.....(((((.((.((.((....)).))------.))(((((...)--)))).)))))......(((((.((((((....)))))).....))))). ( -27.00)
>DroYak_CAF1 68514 95 - 1
GUUGCGUUACAGCAGUUACAGCGGCUACAGCUUCAGCGGCUGCUGC--AGCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU
..((((.....((((((.((...(((((.((....))(((((...)--)))).))))).))))))))...((((((....))))))......)))). ( -34.20)
>DroAna_CAF1 64450 80 - 1
GUUGCGUUACAGCAGUUACGGCAGCUAC---------------ACC--GGCUAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU
..(((......)))(((((...((((..---------------...--)))).)))))......(((((.((((((....)))))).....))))). ( -22.50)
>consensus
GUUGCGUUACAGCAGUUACAGC_GCUACAGC__CAGCGGCUGCAGC__AGCCAGUGGCAUGAAUUGCGAUGAUGGAGUUAUCCAUUUAUACUCGCAU
......................................(((((.(......).)))))......(((((.((((((....)))))).....))))). (-13.33 = -14.00 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:59 2006