Locus 4698

Sequence ID 3R_DroMel_CAF1
Location 12,347,937 – 12,348,031
Length 94
Max. P 0.909835
window7723

overview

Window 3

Location 12,347,937 – 12,348,031
Length 94
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 75.67
Mean single sequence MFE -28.62
Consensus MFE -19.63
Energy contribution -19.88
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -1.53
Structure conservation index 0.69
SVM decision value 1.07
SVM RNA-class probability 0.909835
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12347937 94 + 27905053
CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAU------GGCAAUGGC------AAUGGGAAUGG----------
......(((((((..((((---(((.(((.(((((((..(.((....))..)..)))))))))).))...((.....------..)).))))------)...)))))))---------- ( -29.70)
>DroPse_CAF1 17748 86 + 1
CAAUAACCAUUUCAAUGCUACUACUGUGCGUGAUGCAAGAGGCAUGAGUAAUUGACUAUC----AAGGGAGAGGGAGAGC-G------------------UGAGAGAGG----------
......((.((((.(((((.((.((.(.(.((((((((...((....))..))).).)))----)..).).))..)))))-)------------------)..))))))---------- ( -17.70)
>DroSec_CAF1 16692 106 + 1
CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAUGUGGAUGGCAAUGGCAAUGGGAAUGGGAAUGG----------
......(((((((..((((---(((.(((.(((((((..(.((....))..)..)))))))))).)).........(((.....))).)))))...)))))))......---------- ( -32.70)
>DroSim_CAF1 15850 106 + 1
CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAUGUGGAUGGCAAUGGCAAUGGGAAUGGGAAUGG----------
......(((((((..((((---(((.(((.(((((((..(.((....))..)..)))))))))).)).........(((.....))).)))))...)))))))......---------- ( -32.70)
>DroEre_CAF1 16605 88 + 1
CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUUGGCAAAGGGAUGGGGUUGGCAGUGGGAAUGG----------------------------
......((((((((((.((---(((.(((.(((((((..(.((....))..)..))))))))))...)).))).))))).)))))......---------------------------- ( -27.60)
>DroYak_CAF1 12735 116 + 1
CAAUAACCAUUUCAAUGCU---ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGUUGGCAAUGGGAAUGGAAAUGGAAAUGGGACGGGGGCUCUGGGC
......((((((((((.((---(((.(((.(((((((..(.((....))..)..))))))))))...)).))).))))).)))))....................(((.....)))... ( -31.30)
>consensus
CAAUAACCAUUUCAAUGCU___ACUGUGCGUGAUGGCUGGGGCAUGAGUAAUUGGCCAUCGGCAAAGGGAUGGGGAUGGC_AUGGCAAUGGC______AAUGGGAAUGG__________
......((((..(.((((.........))))((((((..(.((....))..)..))))))......)..)))).............................................. (-19.63 = -19.88 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:52 2006