| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,347,490 – 12,347,596 |
| Length | 106 |
| Max. P | 0.812518 |
| Location | 12,347,490 – 12,347,596 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.41 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -15.66 |
| Energy contribution | -15.97 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12347490 106 - 27905053 CAGUGUCCAGAAAAGAUGGAGCUGAGGG---AAACGCUUGAAAUGGAUACGAUUGACCGCUUCUCGGUCAAGAUUGAUUUUCGCCUUCCCAUUGGCAUGCCAG---------AAGAAG-- ((((.((((.......)))))))).(((---((..((..(((((.(((....(((((((.....))))))).))).))))).)).))))).((((....))))---------......-- ( -32.90) >DroSec_CAF1 16264 106 - 1 CAGUGUCCAGAAAAGGUGGAGCUGAGGG---AAACGCUUGAAAUGGAUACGAUUGACCGCUUCUUGGUCAAGAUUGAUUUUGGCUUUCCCAUUGGCAUAC-AG---------AAGAAGA- ..(((((((.......))))((..((((---(((.(((.(((((.(((....(((((((.....))))))).))).)))))))))))))).)..)).)))-..---------.......- ( -32.50) >DroSim_CAF1 15394 115 - 1 CAGUGUCCAGAAAAGAUGGAGCUGAGGG---AAACGCUUGAAAUGGAUACGAUUGACCGCUUCUUGGUCAAGAUUGAUUUUGGCUUUCCCAUUGGCAUAC-AGAAAAAGAAGAAGAAGA- ..(((((((.......))))((..((((---(((.(((.(((((.(((....(((((((.....))))))).))).)))))))))))))).)..)).)))-..................- ( -33.40) >DroEre_CAF1 16157 100 - 1 CAGUGUCCAGAAAAGAUGAAGCCGAGGG---AAACGCUUGAAAUGGAUACGAUUGACCGCCUCUCGGUCAAGAUUGAUUUUGGCUUUCCCAU------AC-AG---------AUGAAGA- ..((((.((.......)).......(((---(((.(((.(((((.(((....(((((((.....))))))).))).))))))))))))))))------))-..---------.......- ( -25.60) >DroYak_CAF1 12283 89 - 1 -----------AAAGAUGGAGACGAGGG---AAACGCUUGAAAUGGAUACGAUUGACCGCCUCUCGGUCAAGAUUGAUUUUGGCUUUCCCAU------AC-AG---------AUGAAGA- -----------.....((....)).(((---(((.(((.(((((.(((....(((((((.....))))))).))).))))))))))))))..------..-..---------.......- ( -26.90) >DroPer_CAF1 13145 94 - 1 CAGUCUCU----------GAGCGGGGGGAAAAAAUGCAUGAAAUGGAUAUGGGUGACUGGGAAGCGGUCAAGAUUGAUUUUGGCUUUCGCUU------GA-GG---------UCGGGGGA ...(((((----------((.(.(((.((((....((.((((((.(((.....((((((.....))))))..))).)))))))))))).)))------..-).---------))))))). ( -26.80) >consensus CAGUGUCCAGAAAAGAUGGAGCUGAGGG___AAACGCUUGAAAUGGAUACGAUUGACCGCUUCUCGGUCAAGAUUGAUUUUGGCUUUCCCAU______AC_AG_________AAGAAGA_ .........................(((...(((.((.((((((.(((....(((((((.....))))))).))).)))))))))))))).............................. (-15.66 = -15.97 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:51 2006