Locus 4694

Sequence ID 3R_DroMel_CAF1
Location 12,344,971 – 12,345,072
Length 101
Max. P 0.953295
window7715

overview

Window 5

Location 12,344,971 – 12,345,072
Length 101
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 94.08
Mean single sequence MFE -19.66
Consensus MFE -16.28
Energy contribution -17.04
Covariance contribution 0.76
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.83
SVM decision value 1.43
SVM RNA-class probability 0.953295
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12344971 101 + 27905053
UAAAUGCCCAAGAAGCAUUUCAUGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG-----
.....(((..((((((..((((.(((((...(((((..........)))))....)))))..)))).......((((.......))))))))))..)))..----- ( -17.10)
>DroSec_CAF1 13766 101 + 1
UAAAUGCCCAAGAAGCAUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUGACUUCAGUUGUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG-----
.....(((..((((((..((((((((((..((((((..........))))))...)))))).)))).......((((.......))))))))))..)))..----- ( -24.10)
>DroSim_CAF1 12892 101 + 1
UAAAUGCCCAAGAAGCAUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG-----
.....(((..((((((..((((((((((...(((((..........)))))....)))))).)))).......((((.......))))))))))..)))..----- ( -20.90)
>DroEre_CAF1 13701 101 + 1
UAAAUGCCCAAGCAGCUUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGACUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAAGCCG-----
....(((....)))(((((.((((((((...(((((..........)))))....)))))).))........(((((.......))))).....)))))..----- ( -12.70)
>DroYak_CAF1 9702 106 + 1
UAAAUGCCCAAGAAGCUUUCCAGGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCGAAAGA
.....(((..((((((..((((((((((...(((((..........)))))....)))).)))))).......((((.......))))))))))..)))(....). ( -23.50)
>consensus
UAAAUGCCCAAGAAGCAUUCCAAGCUGACACAAUUUAUCAAAGUAAAAAUUCACUUCAGUUCUGGAUUAUCCCCAUAUAAAUUUUAUGGCUUUUAAGGCCG_____
.....(((..((((((..((((((((((...(((((..........)))))....)))))).)))).......((((.......))))))))))..)))....... (-16.28 = -17.04 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:44 2006