| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,336,684 – 12,336,777 |
| Length | 93 |
| Max. P | 0.939857 |
| Location | 12,336,684 – 12,336,777 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 93.37 |
| Mean single sequence MFE | -16.67 |
| Consensus MFE | -14.96 |
| Energy contribution | -15.03 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12336684 93 + 27905053 AGUUCGGGUAAAACCAUUUCAAUUCCGUCUUGAUUUGCAUUUCAAUUCCAAAUCAAAUUUUUCAAUUGCCAGCUGGACGCACUCACCGACCCA .....((((....(((...(((((.....((((((((...........)))))))).......))))).....))).((.......)))))). ( -13.00) >DroSec_CAF1 5515 93 + 1 AGUCCGGCUAAAACCAUUUCAAUUCCGUCUUGAUUUGCAUUUCAAUUCCAAAUCAAAUUUUUCAAUUGGCAGCUGGACGCACUCGCCCACCCA .((((((((....(((.............((((((((...........))))))))..........))).))))))))((....))....... ( -19.50) >DroSim_CAF1 4770 93 + 1 AGUCCGGCUAAAACCAUUUCAAUUCCGUCUUGAUUUGCAUUUCAAUUCCAAAUCAAAUUUUUCAAUUGCCAGCUGGACGCAUUCGCCCACCCA .((((((((.....((..((((.......))))..)).....(((((..(((......)))..)))))..))))))))((....))....... ( -17.30) >DroEre_CAF1 4921 88 + 1 AGUCCGGCUAAAACCAUUUCAAUUCCGUCUUGAUUUGCAUUUCAAUUCCAAAUCAAAUUUUUCAAUUGCCAGCUGGACGCACUCAUCC----- .((((((((.....((..((((.......))))..)).....(((((..(((......)))..)))))..))))))))..........----- ( -16.90) >consensus AGUCCGGCUAAAACCAUUUCAAUUCCGUCUUGAUUUGCAUUUCAAUUCCAAAUCAAAUUUUUCAAUUGCCAGCUGGACGCACUCACCCACCCA .((((((((.....((..((((.......))))..)).....(((((..(((......)))..)))))..))))))))............... (-14.96 = -15.03 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:24 2006