Locus 468

Sequence ID 3R_DroMel_CAF1
Location 1,755,206 – 1,755,305
Length 99
Max. P 0.657567
window759

overview

Window 9

Location 1,755,206 – 1,755,305
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 82.42
Mean single sequence MFE -23.01
Consensus MFE -16.29
Energy contribution -16.87
Covariance contribution 0.58
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.71
SVM decision value 0.26
SVM RNA-class probability 0.657567
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1755206 99 - 27905053
CGGCAACUUAUUUAUU-CUAGCUGUUUGAACUUCAUCAGGCAGCUCAUAAUGCUCAUAAUGCCGGCGAUAAUCGCGCCGAAGGGCGUUACAUUUUUAAGC-
(((((.......((((-..((((((((((......))))))))))...)))).......)))))(((.....)))(((....)))...............- ( -31.44)
>DroPse_CAF1 55569 90 - 1
AAGCGACUUAUUUAUU-UUAGCUGUUUGUACUUCAUCAGGCAGCUCAU---------AAUGCCUCUGAUAAUCGCGCUUAUGGGCGUUAAAUUUUUAAAG-
..((((.(((((((((-..(((((((((........)))))))))...---------)))).....)))))))))(((....)))...............- ( -20.80)
>DroGri_CAF1 65756 89 - 1
UAGCUUCUUAUUUAUU--UAGCUGUUUGUACAUCAUCAGGCAGCUCAU---------AAUGCUUGUGAUUAUCUGGCGGUAGAACGUUAAAUUUUAAAGC-
..((((...(((((((--(.(((((..(...((((.((((((......---------..))))))))))...)..))))).)))...)))))....))))- ( -19.80)
>DroSec_CAF1 64467 90 - 1
CGGCAACUUAUUUAUU-UUAGCUGUUUUAACUUCAUCAGGCAGCUCAU---------AAUGCAGGCGAUAAUCGCGCCGAAGGGCGUUACAUUUUUAAGC-
.(....).........-..((((((((..........))))))))...---------...((..(((.....)))(((....))).............))- ( -19.40)
>DroAna_CAF1 59193 92 - 1
UGGCAACUUAUUUAUUUUUGGCUGUUUGUACUUCAUCAGGCAGCUCAU---------AAUGCCGGCGAUAAUCGCGCUUACGGGCGUUAAAUUUUUAAGCC
.(((...............(((((((((........)))))))))..(---------((((((((((.......))))....))))))).........))) ( -26.60)
>DroPer_CAF1 62076 90 - 1
AAGCAACUUAUUUAUU-UUAGCUGUUUGUACUUCAUCAGGCAGCUCAU---------AAUGCCUCUGAUAAUCGCGCUUAUGGGCGUUAAAUUUUUAAAG-
................-..(((((((((........)))))))))..(---------(((((((.(((.........))).))))))))...........- ( -20.00)
>consensus
AAGCAACUUAUUUAUU_UUAGCUGUUUGUACUUCAUCAGGCAGCUCAU_________AAUGCCGGCGAUAAUCGCGCUGAAGGGCGUUAAAUUUUUAAGC_
..(((..............(((((((((........)))))))))..............)))...........(((((....))))).............. (-16.29 = -16.87 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:56 2006