Locus 4679

Sequence ID 3R_DroMel_CAF1
Location 12,329,874 – 12,329,994
Length 120
Max. P 0.978465
window7682

overview

Window 2

Location 12,329,874 – 12,329,994
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -38.70
Consensus MFE -37.70
Energy contribution -38.03
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.70
Structure conservation index 0.97
SVM decision value 1.81
SVM RNA-class probability 0.978465
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12329874 120 - 27905053
UUCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUCGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGCGCAAAAAAAAGA
.........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).))))))((((.((((((......)))))))))))).......... ( -39.30)
>DroSec_CAF1 21186 120 - 1
UUCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUAGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGAGCAAAAAAAAGA
.........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).)))))).(((.((((((......)))))).))))).......... ( -37.00)
>DroSim_CAF1 17225 119 - 1
UCCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUAGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGCGCAAAA-AAAGA
.........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).))))))((((.((((((......))))))))))))....-..... ( -39.80)
>consensus
UUCCCAUAAAGUAUCUUGAAUAUUUCAGGUGUGCUAGCAAUUUAAGGGCCUGCGUCGCAUUCAGCUGCGGGUUCAUUAGAUGUCCACUGCAACUUCAUUUGCAGGGGCGCAAAAAAAAGA
.........((((((((((.....))))).))))).((.(((((((((((((((..((.....))))))))))).))))))((((.((((((......)))))))))))).......... (-37.70 = -38.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:14 2006