| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,328,985 – 12,329,103 |
| Length | 118 |
| Max. P | 0.829350 |
| Location | 12,328,985 – 12,329,103 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.64 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -21.90 |
| Energy contribution | -21.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12328985 118 + 27905053 AAAAGGUUGACAAACAAAAAACAACAACAAAUUAGGGUGGCUGGUCCGGAGGACAAAAGA-AACAAAAACCUUUU-UUUUCGGGGCUGCUUCCAAAAGCAAACCACACACACACACGUAC .....((((............))))...........((((..(((((.(((((.(((((.-.........)))))-))))).)))))((((....))))...)))).............. ( -22.50) >DroSec_CAF1 20134 118 + 1 AAAAGGUUGACAAACAAAAAACAACAACAAAUUAGGGUGGCUGGUCCGGAGGACAAAAGAAAACAAAAACCUUUUUUUUUCGGGGCUGCUUCCAAAAGCAAACCACACACAC--ACAUAC .....((((............))))...........((((..(((((.(((((.(((((...........))))).))))).)))))((((....))))...))))......--...... ( -23.60) >DroSim_CAF1 16159 117 + 1 AAAAGGUUGACAAACAAAAAACAACAACAAAUUAGGGUGGCUGGUCCGGAGGACAAAAGAAAACAAAAACCUUUU-UUUUCGGGGCUGCUUCCAAAAGCAAAACACACACAC--ACAUAC .....((((............))))...........(((..((((((.(((((.(((((...........)))))-))))).))))(((((....)))))...))..)))..--...... ( -20.80) >consensus AAAAGGUUGACAAACAAAAAACAACAACAAAUUAGGGUGGCUGGUCCGGAGGACAAAAGAAAACAAAAACCUUUU_UUUUCGGGGCUGCUUCCAAAAGCAAACCACACACAC__ACAUAC .....((((............))))..........((.(((.(((((.(((((.(((((...........))))).))))).)))))))).))........................... (-21.90 = -21.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:13 2006