Locus 4674

Sequence ID 3R_DroMel_CAF1
Location 12,324,565 – 12,324,685
Length 120
Max. P 0.632642
window7672

overview

Window 2

Location 12,324,565 – 12,324,685
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -43.67
Consensus MFE -44.11
Energy contribution -43.67
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.42
Structure conservation index 1.01
SVM decision value 0.20
SVM RNA-class probability 0.632642
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12324565 120 - 27905053
GAAAAUGUUGCGAUUUCCGCAUGUCUGCGGUCUUUGUUUGCUGCUUAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGAGCCAAUGGUCGCCAGGUGCCAGCGAUGGAU
......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... ( -43.40)
>DroSec_CAF1 15782 120 - 1
GAAAAUGUCGCGAUUUCCGCAUGUCUGCGGUCUAUGUUUGCUGCUCAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGGGCCAAUGGUCGCCAGGUGCCAGCGAUGGGU
......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... ( -43.80)
>DroSim_CAF1 11854 120 - 1
GAAAAUGUCGCGAUUUCCGCAUGUCUGCGGUCUUUGUUUGCUGCUCAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGGGCCAAUGGUCGCCAGGUGCCAGCGAUGGGU
......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... ( -43.80)
>consensus
GAAAAUGUCGCGAUUUCCGCAUGUCUGCGGUCUUUGUUUGCUGCUCAAAUAUUGGCAGAUUUUGGCCUUGGCCCCGUUUCGGACUUCCGGGCCAAUGGUCGCCAGGUGCCAGCGAUGGGU
......(((((.....(((((....)))))..........(((((........)))))....((((((((((.(((((((((....))))...)))))..)))))).))))))))).... (-44.11 = -43.67 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:05 2006