Locus 4673

Sequence ID 3R_DroMel_CAF1
Location 12,322,314 – 12,322,434
Length 120
Max. P 0.569822
window7671

overview

Window 1

Location 12,322,314 – 12,322,434
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -46.17
Consensus MFE -43.54
Energy contribution -43.43
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.94
SVM decision value 0.07
SVM RNA-class probability 0.569822
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12322314 120 + 27905053
GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGGUUGUGGUUAGCCAUAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGUUGUUCGAGAAGUCGGCGAGUG
(((..((((...((.((((....)))).))...))))..)))..((((((((....)))))))).((((((((((.((((..((((....))))..)))).))).......))))))).. ( -43.91)
>DroSec_CAF1 13556 120 + 1
GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGCUUGUGGUUAGGCACAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGCUGUUCGAGAAGUCGGCGAGUG
(((..((((...((.((((....)))).))...))))..))).(((((((.(...((.(((((.(((((((((.((........))..)))))))))))))))).......).))))))) ( -47.00)
>DroSim_CAF1 9645 120 + 1
GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGCUUGUGGUUAGCCACAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGCUGUUCGAGAAGUCGGCGAGUG
(((..((((...((.((((....)))).))...))))..))).(((((((((....))(((((.(((((((((.((........))..)))))))))))))).(((....)))))))))) ( -47.60)
>consensus
GCUUGGAAAAUUGGCGCGUGCGAAUGCUCCUGGUUUCUGGGCCCGCUUGUGGUUAGCCACAGCUCUUCGCUGGAAGAAUCAAUGCUAAUCAGCGAGGGCUGUUCGAGAAGUCGGCGAGUG
(((..((((...((.((((....)))).))...))))..))).(((((((........(((((.(((((((((.((........))..)))))))))))))).(((....)))))))))) (-43.54 = -43.43 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:04 2006