Locus 4672

Sequence ID 3R_DroMel_CAF1
Location 12,321,747 – 12,321,867
Length 120
Max. P 0.885692
window7670

overview

Window 0

Location 12,321,747 – 12,321,867
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.28
Mean single sequence MFE -37.74
Consensus MFE -32.32
Energy contribution -33.10
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.81
Structure conservation index 0.86
SVM decision value 0.94
SVM RNA-class probability 0.885692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12321747 120 + 27905053
CAAUAAAGGCGUCCUAACGGGUCUUGCUUAUAUCUAAGUUUUAGCCGAUGCGCCGCUGCCAAGAACAAAAGAAUCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGACUGCCG
.......(((..((....))((((((((((....))))..(((((.......((((((((..((.........))..(((....)))...))))))))......))))))))))).))). ( -38.72)
>DroSec_CAF1 12960 120 + 1
CAAUAAAAGCGUCUUAACGGUUCUUGCUUAUAUCCAAGUUUGAGCCGAUGCGCCGCUGCCAAGAACAAAAGAACCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGACAGCCG
........(((((((..((((((..((((......))))..))))))..(((((((((((.....(....)......(((....)))...)))))))).....)))....))))).)).. ( -38.00)
>DroSim_CAF1 9071 120 + 1
CAAUAAAAGCGUCUUAACGGUUCUUGCUUAUAUCUAAGUUUGAGCCGAUGCGCCGCUGCCAAGAACAAAAGAACCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGCCCGCCG
.......(((((.....((((((..(((((....)))))..)))))).....((((((((.....(....)......(((....)))...))))))))....)))))............. ( -36.50)
>consensus
CAAUAAAAGCGUCUUAACGGUUCUUGCUUAUAUCUAAGUUUGAGCCGAUGCGCCGCUGCCAAGAACAAAAGAACCAAGGGAGAGCCCAUAGGCAGUGGAAAAAUGCUAACAAGACAGCCG
.......(((((.....((((((..(((((....)))))..)))))).....((((((((.....(....)......(((....)))...))))))))....)))))............. (-32.32 = -33.10 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:02 2006