Locus 4667

Sequence ID 3R_DroMel_CAF1
Location 12,318,541 – 12,318,661
Length 120
Max. P 0.699688
window7660

overview

Window 0

Location 12,318,541 – 12,318,661
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.22
Mean single sequence MFE -39.03
Consensus MFE -34.69
Energy contribution -34.97
Covariance contribution 0.28
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.89
SVM decision value 0.35
SVM RNA-class probability 0.699688
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12318541 120 - 27905053
CAAGGAGAUCCUACGGCUGCAGGCCUAUCCACGUUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGUGGAGACCACAAGUACUUCAACCUAACGGAGCACAAUGCCACCACGCUGGUGGU
..(((....)))..(((.....))).......(((((.((((.(((......))))))).(((..((((...))))..)))............))))).....((((((.....)))))) ( -40.40)
>DroSec_CAF1 9796 120 - 1
CAAGGAGAUCCUCCGGCUGCAGGCCUAUCCACGCUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGCGGAGACCACAAGUACUUCAACCUCACGGAGCACAAUGCCACCACGCUGGUGGU
...((((...))))(((.....))).......(((((.((((.(((......)))))))........((((((.....)).))))........))))).....((((((.....)))))) ( -43.00)
>DroSim_CAF1 5895 120 - 1
CAAGGAGAUCCUCCGGCUGCAGGCCUAUCCACGCUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGCGGAGACCACAAGUACUUCAACCUCACGGAGCACANNNNNNNNNNNNNNNNNNN
...((((...))))(((.....))).......(((((.((((.(((......)))))))........((((((.....)).))))........)))))...................... ( -33.70)
>consensus
CAAGGAGAUCCUCCGGCUGCAGGCCUAUCCACGCUCCACGGCCGCCCUCAAAGGCGCCGAUGCCAGCGGAGACCACAAGUACUUCAACCUCACGGAGCACAAUGCCACCACGCUGGUGGU
..(((....)))..(((.....))).......(((((.((((.(((......)))))))........((((((.....)).))))........))))).....((((((.....)))))) (-34.69 = -34.97 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:53 2006