Locus 4663

Sequence ID 3R_DroMel_CAF1
Location 12,295,034 – 12,295,138
Length 104
Max. P 0.569033
window7654

overview

Window 4

Location 12,295,034 – 12,295,138
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 78.72
Mean single sequence MFE -40.60
Consensus MFE -23.52
Energy contribution -23.22
Covariance contribution -0.30
Combinations/Pair 1.35
Mean z-score -1.61
Structure conservation index 0.58
SVM decision value 0.07
SVM RNA-class probability 0.569033
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12295034 104 - 27905053
GCUUGGAAAAUGUCGCUGGAUGGCGGUAGGUUGCGCUACGAAGACGAAAAUGGUAAAACCGUGGUUCUGGCAGCCAAAGGGCGCACCUUCCAGGUGGGCUCCUA
..........(..((((....))))..)((((((((((((...((.......)).....))))))....))))))..(((((.((((.....)))).)).))). ( -34.90)
>DroPse_CAF1 42803 104 - 1
UCCAUCAAAAUGUCUUUGGAUGGCGCUAAAUUGCGGUAUGUUGACGAAAGCGGCUUGCCCGUGGUUGUGGCGGCCAAAGGACGCACCUUCCAGGUGGGUUCGUA
((((............))))(((((((((((..(((((.((((.(....))))).)).)))..))).)))).))))..((((.((((.....)))).))))... ( -40.30)
>DroSec_CAF1 16286 104 - 1
GCUUGGAAAAUGUCGCUGGAUGGCGGCAGGUUGCGCUACGAGGACGAAAAUGGUAAAACCGUGGUUCUGGCAGCUAAAGGACGCACCUUCCAGGUGGGCUCCUA
....(.((..(((((((....)))))))..)).)(((.(.(((((....((((.....)))).))))).).)))...(((((.((((.....)))).).)))). ( -38.00)
>DroEre_CAF1 15455 104 - 1
GCUUGGAAAAUGUCGCUGGAUGGCGCCAGGUUGCGCUACGAGGACGAAAAUGGUGGAACCGUGGUUCUGGCAGCCAAGGGGCGCACCUUCCAGGUGGGCUCCUA
...(((....((((.((.(.((((((......))))))).))))))....((.((((((....)))))).)).)))((((((.((((.....)))).)))))). ( -44.50)
>DroAna_CAF1 14849 104 - 1
GCCUGAAAAAUGUCCCUCGAUGGUGCCCGGCUGCACUAUGUGGACAAGGAUGGCGCUGUCGUGGUGGUGCCCGCCAAGGGUCGCUCCUUCCAGGUCGGCGCCUA
.(((......(((((..(.(((((((......)))))))).))))))))..(((((((.(.(((.(((((((.....))).))))....))).).))))))).. ( -45.50)
>DroPer_CAF1 42871 104 - 1
UCCAGCAAAAUGUCUUUGGAUGGCGCUAAAUUGCGGUAUGUUGACGAAAGCGGCUUGCCCGUGGUUGUGGCGGCCAAAGGACGCACCUUCCAGGUGGGUUCGUA
((((((.....))...))))(((((((((((..(((((.((((.(....))))).)).)))..))).)))).))))..((((.((((.....)))).))))... ( -40.40)
>consensus
GCCUGGAAAAUGUCGCUGGAUGGCGCCAGGUUGCGCUACGAGGACGAAAAUGGCAAAACCGUGGUUCUGGCAGCCAAAGGACGCACCUUCCAGGUGGGCUCCUA
..........((((......((((((......))))))....))))...((((.....))))((((.....))))...((((.((((.....)))).))))... (-23.52 = -23.22 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:47 2006