| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,293,755 – 12,293,851 |
| Length | 96 |
| Max. P | 0.650394 |
| Location | 12,293,755 – 12,293,851 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 84.78 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -25.03 |
| Energy contribution | -25.57 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12293755 96 + 27905053 -GCUGAUGGCGGGGUGUCAGAGUUAGUUAUGUCUAUGACUAAUGGGGAUGCAUCUGAUGAUUCGUCGGUGCUGUCUACACUGAUAGGCGUCUGUUUG -((.((((.(....((((((.(((((((((....)))))))))(..((((((.((((((...))))))))).)))..).))))))).)))).))... ( -28.90) >DroVir_CAF1 15364 96 + 1 UGAUGAUGAAGGCGUGGAUGAGUUGGUUAUAUCUAUGACCAGCGGCGAAGCAUCAGAGGAUUCAUCGGUGGAGUCGACACUGAUAA-UACCAGUACU ....((((((..(...((((.(((((((((....))))))))).......))))...)..))))))((((..((((....))))..-))))...... ( -28.90) >DroSec_CAF1 15007 96 + 1 -GGGGAUGGCGGUGUGUCAGAGUUAGUUAUGUCAAUGACUAAUGGGGAUGCAUCUGAUGAUUCGUCGGUGCUGUCUACACUGAUAGGCGUCUGUUUG -..(((((.(((((((((...(((((((((....)))))))))...)))))))).........(((((((.......))))))).).)))))..... ( -33.70) >DroSim_CAF1 13387 96 + 1 -GGUGAUGGCGGUGUGUCAGAGUUAGUUAUGUCAAUGACUAAUGGGGAUGCAUCUGAUGAUUCGUCGGUGCUGUCUACACUGAUAGGCGUCUGUUUG -...((((.(((((((((...(((((((((....)))))))))...)))))))).........(((((((.......))))))).).))))...... ( -32.20) >DroEre_CAF1 14178 96 + 1 -GGUGAUGGCGGUGUAUCAGAGUUAGUAAUGUCAAUAACAAACGGGGAGGCAUCUGAUGAUUCGUCGGUGCUGUCUACACUGAUGGGCGUCUGUUUG -......((((.(.((((((.(((.((.((....)).)).)))(..((((((.((((((...)))))))))).))..).)))))).)))))...... ( -25.50) >DroYak_CAF1 14173 96 + 1 -GGUGAUGGCGGUGUGUCAGCGUUAGUUAUGUCAAUGACUAUUGGGGAGGCAUCUGAUGAUUCGUCGGUGCUGUCUACACUGAUGGGCGUCUGUUUC -.........(((((.((..((.(((((((....))))))).))..)).))))).((((.((((((((((.......))))))))))))))...... ( -31.60) >consensus _GGUGAUGGCGGUGUGUCAGAGUUAGUUAUGUCAAUGACUAAUGGGGAUGCAUCUGAUGAUUCGUCGGUGCUGUCUACACUGAUAGGCGUCUGUUUG ....((((.(((((..((...(((((((((....)))))))))...))..)))).........(((((((.......))))))).).))))...... (-25.03 = -25.57 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:46 2006