Locus 4660

Sequence ID	3R_DroMel_CAF1
Location	12,280,293 – 12,280,387
Length	94
Max. P	0.753563

overview

Window 1

Location	12,280,293 – 12,280,387
Length	94
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	91.28
Mean single sequence MFE	-33.24
Consensus MFE	-28.49
Energy contribution	-28.57
Covariance contribution	0.08
Combinations/Pair	1.09
Mean z-score	-1.40
Structure conservation index	0.86
SVM decision value	0.48
SVM RNA-class probability	0.753563
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 12280293 94 + 27905053
AAAGUGCCGAGCUCCAAUUCCGUUUCUUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUCCCGCACAGAGGCUGCCGUCCCUCGGCAGCCG
...((((.(((((((......(((.........))).((((((.....)))))))).))).))..))))...((((((((.....)))))))). ( -36.00)
>DroSec_CAF1 1589 94 + 1
AAAGUGCCGAGCUCCGUUUCUGUUUCUUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUACCACACAGAGGCUGCCGUCCCUCGGCAGCCG
...(((....(((((....((((........))))..((((((.....)))))))).)))....))).....((((((((.....)))))))). ( -32.60)
>DroSim_CAF1 7 94 + 1
AAAGUGCCGAGCUCCGAUUCCGUUUCUUCUCAUAGCUGGGAUCCUCGUGAUCCUGGAAGCAUCCCACACAGGUGCUGCCGUCCCUCGGCAGCCG
...(((..((((((((((..((.....(((((....)))))....))..)))..)).))).))...)))..(.(((((((.....)))))))). ( -30.40)
>DroEre_CAF1 10 94 + 1
AAAGUGCCGAGCUCCGAUUCCGUUUCAUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUCUCGCGUAGAGGCUGCCGCCCCCCGGCAGCCG
....(((((((......(((((((.........))).((((((.....))))))))))....)))).)))..((((((((.....)))))))). ( -33.90)
>DroYak_CAF1 7 94 + 1
AAAGUGCCGAGCUCCGAUUCCGAUUCUUCUCAUAGCCGGGGUCCUUGUGAUCCUGGAAGCAUCUCGCGCAGAUGCUGCCGUUCCCCGGCAGCCG
...((((.(((((.((....)).............((((((((.....)))))))).))).))..))))....(((((((.....))))))).. ( -33.30)
>consensus
AAAGUGCCGAGCUCCGAUUCCGUUUCUUCUCAUAGCUGGGAUCCUUGUGAUCCUGGAAGCAUCCCGCACAGAGGCUGCCGUCCCUCGGCAGCCG
...((((.(((.................)))....((((((((.....))))))))..))))..........((((((((.....)))))))). (-28.49 = -28.57 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:44 2006