| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,269,706 – 12,269,822 |
| Length | 116 |
| Max. P | 0.819525 |
| Location | 12,269,706 – 12,269,822 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.87 |
| Mean single sequence MFE | -45.47 |
| Consensus MFE | -11.27 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12269706 116 - 27905053 AGUAGAUAACGCGAAGUUCGCGAUUACUAGCCUCCAAGGGACUGUUGGCAAUGGAGUACGGUCGCGGCAGCAGCCGUGGCAAGUGCUCUGCCAGGAAUGCCAGUGGUGGCCUGCAG .((((....((((.....)))).......(((.(((..((..(.((((((...((((((.((((((((....))))))))..)))))))))))).)...))..))).))))))).. ( -55.20) >DroVir_CAF1 11057 113 - 1 AAUAAAUGAUGCGCAGC---UGCUGCGAGCAUUCCAAUGGACUGUUGGCUAUGGAAUACGGGCGUGGUAGCAGGCGUGGCAAAUGCUCGACCAGUAAGGCCAGCGUUGGCUGGCAG .........(((...((---(((..((.(.((((((.(((.(....).))))))))).)...))..))))).((((.(((....))))).)).)))..((((((....)))))).. ( -42.30) >DroPse_CAF1 12137 116 - 1 AAUAGAUGAUACGCAGCUCCUGUGUGCCGCUCUCCAAAGGACUAUUGGCUAUCGAGUAGGGACGCGGCAGUAGGCGUGGCAGGUGCUCCACCAGAAACGCCAAUGGAGGCUGACAA ............(((((..((((.(((((((((((...)))(((((.(....).))))).)).))))))...(((((..(.((((...)))).)..))))).))))..)))).).. ( -39.80) >DroGri_CAF1 10855 116 - 1 AGUAAAUGAUGCGCAGCAUCUGCUUGGAGCACUCCAAGGGACUGUUCGAUAUUGAAUAUGGGCGUGGCAACAGGCGAGGCAAGUGCUCGACAAGCAGAGCCAGCGUUGGCUGGCAA .........(((...)))(((((((((((((((((.......((((((....))))))...((.((....)).))..))..)))))))..))))))))((((((....)))))).. ( -46.40) >DroAna_CAF1 12255 116 - 1 AGUAGAUUAUCUGCAGCUCCUGGGGUCCGCUCGCCAAAGGACUAUUGGAAAGUGAAUAAGGACGUGGCAAUAGCCUUGGUAAGUGCUCGACCAGGAAGGCUAGGGAUGGUCUGCAG .(((((((((((..(((((((((.(..((((..((((.((.((((((....((........))....))))))))))))..))))..)..))))))..)))..))))))))))).. ( -49.30) >DroPer_CAF1 12979 116 - 1 AAUAGAUGAUACGCAGCUCCUGUGUGCCGCUCUCCAAAGGACUAUUGGCUAUCGAGUAGGGACGCGGCAGUAGGCGUGGCAGGUGCUCCACCAGAAACGCCAAUGGAGGCUGACAA ............(((((..((((.(((((((((((...)))(((((.(....).))))).)).))))))...(((((..(.((((...)))).)..))))).))))..)))).).. ( -39.80) >consensus AAUAGAUGAUGCGCAGCUCCUGCGUGCCGCUCUCCAAAGGACUAUUGGCUAUCGAAUACGGACGCGGCAGCAGGCGUGGCAAGUGCUCGACCAGAAACGCCAGUGGUGGCUGGCAA .........(((((..................(((...)))((((((.(................).)))))))))))((....))............(((......)))...... (-11.27 = -11.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:41 2006