| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,250,689 – 12,250,791 |
| Length | 102 |
| Max. P | 0.923622 |
| Location | 12,250,689 – 12,250,791 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.06 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -23.07 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.923622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12250689 102 + 27905053 GCAA----CCACCGAA--UU--------GUGA---UAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCCAUAUACAU ....----........--.(--------((((---(.(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).)).)))). ( -26.40) >DroVir_CAF1 81397 114 + 1 GAACGAGUGCCUGCACUUUCGUAC--AAGCAC---UAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCGACAUAUGC .....(((((.((.((....)).)--).))))---).(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).)))......... ( -33.50) >DroPse_CAF1 73001 99 + 1 UUUA----UUACUUG-------------AACC---AAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCCACAUAUCU ....----.......-------------....---..(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).)))......... ( -24.30) >DroGri_CAF1 92494 114 + 1 GCACAGACACACACAC--UCGUAUGUCUUGCA---UAGGCCCCGACGAGAUUCGAACUCAUGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCCACAUAUUC (((.(((((.((....--..)).)))))))).---..(((.(((..((((((.........))))))(((((.....)))))(.((((.........))))).))).)))......... ( -29.50) >DroAna_CAF1 64733 104 + 1 AUUA----CUA-GGAA--UC--------CUAAGCGUAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCCUGUUGUUU ....----.((-((..--.)--------)))((((..(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).))).)))).... ( -26.40) >DroPer_CAF1 72559 99 + 1 UUUA----UUACUUG-------------ACCA---AAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCCACAUAUCU ....----.......-------------....---..(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).)))......... ( -24.30) >consensus GUAA____CCACGCA___UC________ACCA___UAGGCCCCGGCGAGAUUCGAACUCACGAUCUCCUGUUUACUAGACAGGCGCUUUAACCAACUAAGCCACGGCGCCCACAUAUCU .....................................(((.((((((((((.((......)))))))(((((.....)))))))((((.........))))..))).)))......... (-23.07 = -23.10 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:36 2006