| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,248,634 – 12,248,734 |
| Length | 100 |
| Max. P | 0.709377 |
| Location | 12,248,634 – 12,248,734 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -20.27 |
| Consensus MFE | -15.82 |
| Energy contribution | -14.32 |
| Covariance contribution | -1.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12248634 100 + 27905053 AUGUUA-------UAUGAUGCGAAAGUGCUGA-AAGCAAAACAGAAGAAAGAAAAUGAUUUAGGCUGCUCAGUUUCAAGAUGGGAAUAACGAAGGAAUUGUUUUCAGG ......-------......((....)).((((-((((((..(((...(((........)))...)))((((.........)))).............)))))))))). ( -18.10) >DroSec_CAF1 62477 100 + 1 AUGUUA-------UAUGAUGCGAAAGUGCUGG-AAGCAAAACAGAAGAUAGAAGAUGAUUCAAACUGCUAAGUUGCAAGAUGGGAAUUAUGAAGGAAUUGUCUUCAGG .((((.-------......((....))((...-..))..)))).......(((((..((((.((((....)))).((.(((....))).))...))))..)))))... ( -20.50) >DroSim_CAF1 62710 100 + 1 AUGUUA-------UAUGAUGCGAAAGUGCUGG-AAGCAAAACAGAAGAAAGAAGAUGAUUCAGGCUGCUAAGUUGCAAGAUGGGAAUUAUGAAGGAAUUGUCUUCAGG .((((.-------......((....))((...-..))..)))).......(((((..((((.((((....)))).((.(((....))).))...))))..)))))... ( -20.40) >DroYak_CAF1 64244 107 + 1 AUGUUACGAGUAU-AGGAUGCAAUAGGGCUAAAAAGCUGAACAGAAGAAAGAAGAUGAUUCAGACUGGUGAGUUUCAGAGUGGGAAUCACGAGGAAAUUGUCUUUAGG .((((....((((-...)))).....((((....)))).)))).......(((((..(((....((.((((.(..(.....)..).)))).))..)))..)))))... ( -22.10) >consensus AUGUUA_______UAUGAUGCGAAAGUGCUGA_AAGCAAAACAGAAGAAAGAAGAUGAUUCAGACUGCUAAGUUGCAAGAUGGGAAUUACGAAGGAAUUGUCUUCAGG .((((...............(....)((((....)))).)))).......(((((..((((.((((....))))......(.(......).)..))))..)))))... (-15.82 = -14.32 + -1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:36 2006