| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 12,244,915 – 12,245,006 |
| Length | 91 |
| Max. P | 0.747661 |
| Location | 12,244,915 – 12,245,006 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.52 |
| Mean single sequence MFE | -15.41 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.39 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 12244915 91 + 27905053 CUGG-ACAAAUGUCGCGGCAAAUCCAAACAAACAAUUCAUCAAAAGCGGCGACAAUUAAGCAAUAAACUGAAAUGAAAUUCAAAUGAAAAA-----A-- ....-.....((((((.((..........................)).))))))..............((((......)))).........-----.-- ( -12.57) >DroVir_CAF1 73263 99 + 1 CCAUGAAAACUGUCGCGGCAAAUCCAAACAAACAGUUCAUCAAAAGCUGCGACAAUUAAGCAAUAAAAUAAAAUGAAAUUCAAAUGAAAAAUGUGGAAA ((((......(((((((((.......(((.....)))........)))))))))........................(((....)))....))))... ( -18.46) >DroPse_CAF1 66721 95 + 1 CUAU-AGAAAUGUCGCGGCAAAUCCAAACAAACAAUUCAUCAAAAGCGGCGACAAUUAAGCAAUGAAAUGAAAUGAAAUUCAAAUGAAAAAUAAG-U-- ....-.....((((((.((..........................)).))))))..............((((......)))).............-.-- ( -12.77) >DroGri_CAF1 84033 98 + 1 CCAUGAAAACUGUCGCGGCAAAUCCAAACAAACAGUUCAUCAAAAGCUGCGACAAUUAAGCAAUUCAAUGAAAUGAAAUUCAAAUGAAAAAUGUG-UAA ...((((...(((((((((.......(((.....)))........))))))))).........((((......)))).)))).............-... ( -17.56) >DroMoj_CAF1 81163 97 + 1 CUAUGAAAACUGUCGCGGCAAAUCCAAACAAACAGUUCAUCAAAAGCUGCGACAAUUAAGCAAUAA-AUAAAAUGAAAUUCAAAUGAAAAAUGUG-AAA ..........(((((((((.......(((.....)))........)))))))))............-...........((((.((.....)).))-)). ( -15.86) >DroAna_CAF1 59734 86 + 1 CUGU-GGAAAUGUCGCGGCAAAUCCAAACAAACAAUUCAUCAAAAGUUGCGACAAUUAAGCAAU-----GAAAUGAAAUUCAAAUGAAAAA-----A-- .(((-..((.(((((((((..........................))))))))).))..))).(-----(((......)))).........-----.-- ( -15.27) >consensus CUAU_AAAAAUGUCGCGGCAAAUCCAAACAAACAAUUCAUCAAAAGCUGCGACAAUUAAGCAAUAAAAUGAAAUGAAAUUCAAAUGAAAAAUGUG_A__ ..........(((((((((..........................)))))))))........................(((....)))........... (-12.19 = -12.39 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:34 2006